miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 5' -58.9 NC_004333.2 + 9619 0.69 0.29113
Target:  5'- cCGGUUGCGCAccggcuGCCggcggcgCGCCuGCGCc -3'
miRNA:   3'- -GCCGACGCGU------CGGaaa----GUGGuCGCGc -5'
17008 5' -58.9 NC_004333.2 + 11224 0.67 0.388397
Target:  5'- uCGG--GCGCGGCUccUUGCCGGCGCu -3'
miRNA:   3'- -GCCgaCGCGUCGGaaAGUGGUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 11344 0.66 0.454187
Target:  5'- aGGCgGCGCGGUUcgucgUCACCuugccGCGCu -3'
miRNA:   3'- gCCGaCGCGUCGGaa---AGUGGu----CGCGc -5'
17008 5' -58.9 NC_004333.2 + 11914 0.7 0.263235
Target:  5'- cCGGCaUGCGCAGCggcgcgcgCGCCAuuacGCGCGc -3'
miRNA:   3'- -GCCG-ACGCGUCGgaaa----GUGGU----CGCGC- -5'
17008 5' -58.9 NC_004333.2 + 13914 0.74 0.150899
Target:  5'- gCGGCUGCcguggcgaucGUGGCCgcugcCGCCAGCGUGg -3'
miRNA:   3'- -GCCGACG----------CGUCGGaaa--GUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 14239 0.66 0.454187
Target:  5'- aCGGCgUGCGCGcgcGCCUcuUUCgaGCCgAGCgGCGg -3'
miRNA:   3'- -GCCG-ACGCGU---CGGA--AAG--UGG-UCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 14558 0.67 0.415829
Target:  5'- aCGGCUGCGCAGUUUg---UgAGCGUa -3'
miRNA:   3'- -GCCGACGCGUCGGAaaguGgUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 14667 0.67 0.415829
Target:  5'- gCGGCgcauuucGCGCAGCUUgUCGgCCgAGUGCa -3'
miRNA:   3'- -GCCGa------CGCGUCGGAaAGU-GG-UCGCGc -5'
17008 5' -58.9 NC_004333.2 + 15286 0.69 0.29113
Target:  5'- gCGGCgGCGCGGUCagcaucagCACCgGGCGCu -3'
miRNA:   3'- -GCCGaCGCGUCGGaaa-----GUGG-UCGCGc -5'
17008 5' -58.9 NC_004333.2 + 15498 0.73 0.155082
Target:  5'- gGGCUGCucGCGGCgg-UCACCGGCgGCGc -3'
miRNA:   3'- gCCGACG--CGUCGgaaAGUGGUCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 16884 0.72 0.202992
Target:  5'- uCGGCgcagGUGCGGCCggucUCGCCGGCa-- -3'
miRNA:   3'- -GCCGa---CGCGUCGGaa--AGUGGUCGcgc -5'
17008 5' -58.9 NC_004333.2 + 16940 0.7 0.269999
Target:  5'- aCGGCgcugcgccGCGCGGCCgucgCGCCGGCa-- -3'
miRNA:   3'- -GCCGa-------CGCGUCGGaaa-GUGGUCGcgc -5'
17008 5' -58.9 NC_004333.2 + 17159 0.67 0.379521
Target:  5'- -uGCUGCaGCAGCUgcagcgCACCuaccGCGCGa -3'
miRNA:   3'- gcCGACG-CGUCGGaaa---GUGGu---CGCGC- -5'
17008 5' -58.9 NC_004333.2 + 17386 0.66 0.434763
Target:  5'- uCGaGCaGCGCaucgAGCUgcUCGCgCAGCGCGg -3'
miRNA:   3'- -GC-CGaCGCG----UCGGaaAGUG-GUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 17747 0.66 0.464074
Target:  5'- aGGUggUGCGCaagcauucAGCCgg-CGCC-GCGCGg -3'
miRNA:   3'- gCCG--ACGCG--------UCGGaaaGUGGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 18212 0.69 0.29113
Target:  5'- uGGCaGCGCGGCCgcgcUCGgCAcGCGCu -3'
miRNA:   3'- gCCGaCGCGUCGGaa--AGUgGU-CGCGc -5'
17008 5' -58.9 NC_004333.2 + 18270 0.69 0.312
Target:  5'- gCGGCcgaggaugccgcGCGCGGCCcgaUCGCgCAGCGCu -3'
miRNA:   3'- -GCCGa-----------CGCGUCGGaa-AGUG-GUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 18518 0.69 0.29113
Target:  5'- -cGCUGCaGCGGCCUUcgcaGCCGGCgGCa -3'
miRNA:   3'- gcCGACG-CGUCGGAAag--UGGUCG-CGc -5'
17008 5' -58.9 NC_004333.2 + 19272 0.73 0.168267
Target:  5'- aCGGCaaguaUGCGcCGGCCUg-CGCCgAGCGCGa -3'
miRNA:   3'- -GCCG-----ACGC-GUCGGAaaGUGG-UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 19629 0.68 0.353719
Target:  5'- gCGGCgaGCGCGGCCga-CGCUGGC-CGu -3'
miRNA:   3'- -GCCGa-CGCGUCGGaaaGUGGUCGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.