miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17009 5' -55.8 NC_004333.2 + 17383 0.7 0.376203
Target:  5'- -aCGUCGAgcagcgcauCGAGCUGCuCGCGCAGc- -3'
miRNA:   3'- uaGUAGCU---------GCUCGACGcGCGUGUCaa -5'
17009 5' -55.8 NC_004333.2 + 39221 0.71 0.308478
Target:  5'- -cCGUCGGcCGAGCUGCGUGCAa---- -3'
miRNA:   3'- uaGUAGCU-GCUCGACGCGCGUgucaa -5'
17009 5' -55.8 NC_004333.2 + 13622 0.71 0.300698
Target:  5'- cUCGUCGGCGAGCacuucgUGCauCGCGCGGUa -3'
miRNA:   3'- uAGUAGCUGCUCG------ACGc-GCGUGUCAa -5'
17009 5' -55.8 NC_004333.2 + 29880 0.73 0.24388
Target:  5'- aGUCGUCGGCGAagcGCUGCGCgaucgggccgcGCGCGGc- -3'
miRNA:   3'- -UAGUAGCUGCU---CGACGCG-----------CGUGUCaa -5'
17009 5' -55.8 NC_004333.2 + 1636 0.73 0.233647
Target:  5'- cGUCGUCGGCGGcguagcccugaaugcGCUGCGCGguCGGa- -3'
miRNA:   3'- -UAGUAGCUGCU---------------CGACGCGCguGUCaa -5'
17009 5' -55.8 NC_004333.2 + 19616 0.68 0.443166
Target:  5'- gGUCA-CGGCGAGCgcgGCGaGCGCGGc- -3'
miRNA:   3'- -UAGUaGCUGCUCGa--CGCgCGUGUCaa -5'
17009 5' -55.8 NC_004333.2 + 8866 0.66 0.605185
Target:  5'- -gUAUCG-CG-GCUGCG-GCGCGGUUa -3'
miRNA:   3'- uaGUAGCuGCuCGACGCgCGUGUCAA- -5'
17009 5' -55.8 NC_004333.2 + 20752 0.66 0.560276
Target:  5'- cAUCGcCGACGcGGCUGCGCGC-CuGa- -3'
miRNA:   3'- -UAGUaGCUGC-UCGACGCGCGuGuCaa -5'
17009 5' -55.8 NC_004333.2 + 25116 0.66 0.560276
Target:  5'- -gCA-CGGCGAGCacggcgGCGCGCACGu-- -3'
miRNA:   3'- uaGUaGCUGCUCGa-----CGCGCGUGUcaa -5'
17009 5' -55.8 NC_004333.2 + 19923 0.68 0.453271
Target:  5'- cAUCAUCGACGAcgaGCGCGC-CGGg- -3'
miRNA:   3'- -UAGUAGCUGCUcgaCGCGCGuGUCaa -5'
17009 5' -55.8 NC_004333.2 + 4650 0.69 0.394631
Target:  5'- gAUCAUggCGACGGGCagGCcgGCGCGCGGg- -3'
miRNA:   3'- -UAGUA--GCUGCUCGa-CG--CGCGUGUCaa -5'
17009 5' -55.8 NC_004333.2 + 44389 0.66 0.582643
Target:  5'- ---cUCGGCG-GC-GCGUGCGCGGUa -3'
miRNA:   3'- uaguAGCUGCuCGaCGCGCGUGUCAa -5'
17009 5' -55.8 NC_004333.2 + 30227 0.69 0.404062
Target:  5'- gAUCgAUCGACGcGCcGCGCGCGauCAGUg -3'
miRNA:   3'- -UAG-UAGCUGCuCGaCGCGCGU--GUCAa -5'
17009 5' -55.8 NC_004333.2 + 30996 0.67 0.527203
Target:  5'- --uGUUG-CGGGCUGCuCGCGCGGUa -3'
miRNA:   3'- uagUAGCuGCUCGACGcGCGUGUCAa -5'
17009 5' -55.8 NC_004333.2 + 32320 0.66 0.593897
Target:  5'- --gGUCGgucACGAGC-GCGUGCACGGc- -3'
miRNA:   3'- uagUAGC---UGCUCGaCGCGCGUGUCaa -5'
17009 5' -55.8 NC_004333.2 + 39158 0.69 0.407873
Target:  5'- gAUC-UCGACGAcauccugccgcccguGCUGCGCGCGCu--- -3'
miRNA:   3'- -UAGuAGCUGCU---------------CGACGCGCGUGucaa -5'
17009 5' -55.8 NC_004333.2 + 13979 0.7 0.36721
Target:  5'- -cCGgugCGcGCGAGCUGCGCGCGCu--- -3'
miRNA:   3'- uaGUa--GC-UGCUCGACGCGCGUGucaa -5'
17009 5' -55.8 NC_004333.2 + 15761 0.76 0.140138
Target:  5'- cUCGUCaGCGAGCUGCGCgagGCGCGGg- -3'
miRNA:   3'- uAGUAGcUGCUCGACGCG---CGUGUCaa -5'
17009 5' -55.8 NC_004333.2 + 44960 0.73 0.224991
Target:  5'- cGUCAUCGggGCGGGCgGCGCGC-CGGg- -3'
miRNA:   3'- -UAGUAGC--UGCUCGaCGCGCGuGUCaa -5'
17009 5' -55.8 NC_004333.2 + 1225 0.72 0.264069
Target:  5'- uGUCGUCGGCGcgcgccgccuuGGCUGCGCGCG-AGg- -3'
miRNA:   3'- -UAGUAGCUGC-----------UCGACGCGCGUgUCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.