miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17009 5' -55.8 NC_004333.2 + 1225 0.72 0.264069
Target:  5'- uGUCGUCGGCGcgcgccgccuuGGCUGCGCGCG-AGg- -3'
miRNA:   3'- -UAGUAGCUGC-----------UCGACGCGCGUgUCaa -5'
17009 5' -55.8 NC_004333.2 + 1636 0.73 0.233647
Target:  5'- cGUCGUCGGCGGcguagcccugaaugcGCUGCGCGguCGGa- -3'
miRNA:   3'- -UAGUAGCUGCU---------------CGACGCGCguGUCaa -5'
17009 5' -55.8 NC_004333.2 + 2235 0.68 0.47385
Target:  5'- cAUCcgcUCGACGAGCUGCuucuCGCGCAa-- -3'
miRNA:   3'- -UAGu--AGCUGCUCGACGc---GCGUGUcaa -5'
17009 5' -55.8 NC_004333.2 + 4650 0.69 0.394631
Target:  5'- gAUCAUggCGACGGGCagGCcgGCGCGCGGg- -3'
miRNA:   3'- -UAGUA--GCUGCUCGa-CG--CGCGUGUCaa -5'
17009 5' -55.8 NC_004333.2 + 8866 0.66 0.605185
Target:  5'- -gUAUCG-CG-GCUGCG-GCGCGGUUa -3'
miRNA:   3'- uaGUAGCuGCuCGACGCgCGUGUCAA- -5'
17009 5' -55.8 NC_004333.2 + 10510 0.66 0.605185
Target:  5'- ----cCGACGAGCgggucggGCGCGCGCu--- -3'
miRNA:   3'- uaguaGCUGCUCGa------CGCGCGUGucaa -5'
17009 5' -55.8 NC_004333.2 + 10627 0.7 0.36721
Target:  5'- -gCGUCGGCGAGCUGa-CGCACGa-- -3'
miRNA:   3'- uaGUAGCUGCUCGACgcGCGUGUcaa -5'
17009 5' -55.8 NC_004333.2 + 13622 0.71 0.300698
Target:  5'- cUCGUCGGCGAGCacuucgUGCauCGCGCGGUa -3'
miRNA:   3'- uAGUAGCUGCUCG------ACGc-GCGUGUCAa -5'
17009 5' -55.8 NC_004333.2 + 13979 0.7 0.36721
Target:  5'- -cCGgugCGcGCGAGCUGCGCGCGCu--- -3'
miRNA:   3'- uaGUa--GC-UGCUCGACGCGCGUGucaa -5'
17009 5' -55.8 NC_004333.2 + 15761 0.76 0.140138
Target:  5'- cUCGUCaGCGAGCUGCGCgagGCGCGGg- -3'
miRNA:   3'- uAGUAGcUGCUCGACGCG---CGUGUCaa -5'
17009 5' -55.8 NC_004333.2 + 17383 0.7 0.376203
Target:  5'- -aCGUCGAgcagcgcauCGAGCUGCuCGCGCAGc- -3'
miRNA:   3'- uaGUAGCU---------GCUCGACGcGCGUGUCaa -5'
17009 5' -55.8 NC_004333.2 + 18168 0.68 0.433188
Target:  5'- gAUCc-CGACGAGCgGCGCcGCAUGGUg -3'
miRNA:   3'- -UAGuaGCUGCUCGaCGCG-CGUGUCAa -5'
17009 5' -55.8 NC_004333.2 + 19616 0.68 0.443166
Target:  5'- gGUCA-CGGCGAGCgcgGCGaGCGCGGc- -3'
miRNA:   3'- -UAGUaGCUGCUCGa--CGCgCGUGUCaa -5'
17009 5' -55.8 NC_004333.2 + 19923 0.68 0.453271
Target:  5'- cAUCAUCGACGAcgaGCGCGC-CGGg- -3'
miRNA:   3'- -UAGUAGCUGCUcgaCGCGCGuGUCaa -5'
17009 5' -55.8 NC_004333.2 + 20752 0.66 0.560276
Target:  5'- cAUCGcCGACGcGGCUGCGCGC-CuGa- -3'
miRNA:   3'- -UAGUaGCUGC-UCGACGCGCGuGuCaa -5'
17009 5' -55.8 NC_004333.2 + 21892 0.67 0.54918
Target:  5'- -gCAUCGACGGcGCgGUGCGCGCc--- -3'
miRNA:   3'- uaGUAGCUGCU-CGaCGCGCGUGucaa -5'
17009 5' -55.8 NC_004333.2 + 25116 0.66 0.560276
Target:  5'- -gCA-CGGCGAGCacggcgGCGCGCACGu-- -3'
miRNA:   3'- uaGUaGCUGCUCGa-----CGCGCGUGUcaa -5'
17009 5' -55.8 NC_004333.2 + 26444 0.69 0.413633
Target:  5'- cUCGUCGAacuucgcugcguCGAGCUGCugGCGCACGu-- -3'
miRNA:   3'- uAGUAGCU------------GCUCGACG--CGCGUGUcaa -5'
17009 5' -55.8 NC_004333.2 + 26515 0.66 0.605185
Target:  5'- uAUCuUCGAgcaaauggcCGAuCUGCGCGCGCAGc- -3'
miRNA:   3'- -UAGuAGCU---------GCUcGACGCGCGUGUCaa -5'
17009 5' -55.8 NC_004333.2 + 27438 0.66 0.571434
Target:  5'- -gCGUCGGCGAuguccgGCaGCGCGCGCGc-- -3'
miRNA:   3'- uaGUAGCUGCU------CGaCGCGCGUGUcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.