Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 29880 | 0.73 | 0.24388 |
Target: 5'- aGUCGUCGGCGAagcGCUGCGCgaucgggccgcGCGCGGc- -3' miRNA: 3'- -UAGUAGCUGCU---CGACGCG-----------CGUGUCaa -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 30227 | 0.69 | 0.404062 |
Target: 5'- gAUCgAUCGACGcGCcGCGCGCGauCAGUg -3' miRNA: 3'- -UAG-UAGCUGCuCGaCGCGCGU--GUCAa -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 30996 | 0.67 | 0.527203 |
Target: 5'- --uGUUG-CGGGCUGCuCGCGCGGUa -3' miRNA: 3'- uagUAGCuGCUCGACGcGCGUGUCAa -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 32320 | 0.66 | 0.593897 |
Target: 5'- --gGUCGgucACGAGC-GCGUGCACGGc- -3' miRNA: 3'- uagUAGC---UGCUCGaCGCGCGUGUCaa -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 32858 | 0.67 | 0.516338 |
Target: 5'- uUCAUCGACGAcCUGCucgacggcaaGCGCcCGGUg -3' miRNA: 3'- uAGUAGCUGCUcGACG----------CGCGuGUCAa -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 36212 | 0.67 | 0.54918 |
Target: 5'- gAUCGUCGAC--GCUGCGUGCAaGGc- -3' miRNA: 3'- -UAGUAGCUGcuCGACGCGCGUgUCaa -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 39158 | 0.69 | 0.407873 |
Target: 5'- gAUC-UCGACGAcauccugccgcccguGCUGCGCGCGCu--- -3' miRNA: 3'- -UAGuAGCUGCU---------------CGACGCGCGUGucaa -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 39221 | 0.71 | 0.308478 |
Target: 5'- -cCGUCGGcCGAGCUGCGUGCAa---- -3' miRNA: 3'- uaGUAGCU-GCUCGACGCGCGUgucaa -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 40046 | 0.66 | 0.560276 |
Target: 5'- uGUCGUCGACGGGCUcGuCGgGCAUc--- -3' miRNA: 3'- -UAGUAGCUGCUCGA-C-GCgCGUGucaa -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 41124 | 1.03 | 0.00158 |
Target: 5'- cAUCAUCGACGAGCUGCGCGCACAGUUc -3' miRNA: 3'- -UAGUAGCUGCUCGACGCGCGUGUCAA- -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 43326 | 0.67 | 0.527203 |
Target: 5'- -gCAUCGGCacGGCgcGCGCGUACGGUc -3' miRNA: 3'- uaGUAGCUGc-UCGa-CGCGCGUGUCAa -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 44389 | 0.66 | 0.582643 |
Target: 5'- ---cUCGGCG-GC-GCGUGCGCGGUa -3' miRNA: 3'- uaguAGCUGCuCGaCGCGCGUGUCAa -5' |
|||||||
17009 | 5' | -55.8 | NC_004333.2 | + | 44960 | 0.73 | 0.224991 |
Target: 5'- cGUCAUCGggGCGGGCgGCGCGC-CGGg- -3' miRNA: 3'- -UAGUAGC--UGCUCGaCGCGCGuGUCaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home