miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17010 3' -54.1 NC_004333.2 + 2796 0.77 0.179564
Target:  5'- -aGCGGUugCGCAGGGCAUCGU-ACGCGa -3'
miRNA:   3'- ugCGUUA--GCGUCCCGUAGUAgUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 3298 0.68 0.614518
Target:  5'- gGCGCAGcgaGUcGGGCAggUUGUCGCGCGc -3'
miRNA:   3'- -UGCGUUag-CGuCCCGU--AGUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 4639 0.66 0.715788
Target:  5'- aGCGCcAUCGCGaucauggcgacGGGCAggcCggCGCGCGg -3'
miRNA:   3'- -UGCGuUAGCGU-----------CCCGUa--GuaGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 5269 0.66 0.715788
Target:  5'- gAUGCGAUaCG-GGGGCGugcUCAUCAgGCGu -3'
miRNA:   3'- -UGCGUUA-GCgUCCCGU---AGUAGUgCGU- -5'
17010 3' -54.1 NC_004333.2 + 5326 0.66 0.704725
Target:  5'- cGCGCcuUCGCGcuGgAUCGUCACGCc -3'
miRNA:   3'- -UGCGuuAGCGUccCgUAGUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 6072 0.66 0.715788
Target:  5'- gGCGCAccUCGCGacacGCcUCGUCGCGCAg -3'
miRNA:   3'- -UGCGUu-AGCGUcc--CGuAGUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 6620 0.78 0.16051
Target:  5'- cCGCAGUCGCAGGuaAUCAacucgaUCGCGCu -3'
miRNA:   3'- uGCGUUAGCGUCCcgUAGU------AGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 9895 0.68 0.614518
Target:  5'- cGCGCGugcaucgaucucGUCGaacaggcacuuCAGGGCGUgCAUCACGUu -3'
miRNA:   3'- -UGCGU------------UAGC-----------GUCCCGUA-GUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 10200 0.67 0.648525
Target:  5'- cGCGCAcgCGCAugcggccgucGGCAUCAaagcugCGCGCGg -3'
miRNA:   3'- -UGCGUuaGCGUc---------CCGUAGUa-----GUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 10813 0.7 0.451385
Target:  5'- cGCGCGA-CGCGGuGCA-CGUCGCGUAg -3'
miRNA:   3'- -UGCGUUaGCGUCcCGUaGUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 11703 0.68 0.603201
Target:  5'- gACGCAG-CGCcGGGCggCGUgCugGCGu -3'
miRNA:   3'- -UGCGUUaGCGuCCCGuaGUA-GugCGU- -5'
17010 3' -54.1 NC_004333.2 + 11890 0.71 0.421509
Target:  5'- gGCGCGuAUCGCAuGGcGCAggaCGUCGCGUg -3'
miRNA:   3'- -UGCGU-UAGCGU-CC-CGUa--GUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 11956 0.67 0.637191
Target:  5'- gACGCGA-CGCAaGGCAUUcgCACGa- -3'
miRNA:   3'- -UGCGUUaGCGUcCCGUAGuaGUGCgu -5'
17010 3' -54.1 NC_004333.2 + 13132 0.66 0.704725
Target:  5'- -gGCAAccCGCAGGaCAgcgCGUCACGCc -3'
miRNA:   3'- ugCGUUa-GCGUCCcGUa--GUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 13424 0.68 0.614518
Target:  5'- cUGCAuggauAUCGC-GGGCggCGUCACGUc -3'
miRNA:   3'- uGCGU-----UAGCGuCCCGuaGUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 14772 0.7 0.492946
Target:  5'- cGCGCAGUCGCugcgccgcaGGCAUCGccguUCuACGCGa -3'
miRNA:   3'- -UGCGUUAGCGuc-------CCGUAGU----AG-UGCGU- -5'
17010 3' -54.1 NC_004333.2 + 15082 0.68 0.591911
Target:  5'- gGCGCGA-CGaAGGGCucGUgAUCACGCu -3'
miRNA:   3'- -UGCGUUaGCgUCCCG--UAgUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 16357 0.67 0.653055
Target:  5'- cACGCugaucucgcCGCAGGGCAUCuaccucgauuucacgAUCggGCGCAu -3'
miRNA:   3'- -UGCGuua------GCGUCCCGUAG---------------UAG--UGCGU- -5'
17010 3' -54.1 NC_004333.2 + 16547 0.72 0.37447
Target:  5'- gGCGCAAcUGCccGGCGUCcGUCACGCu -3'
miRNA:   3'- -UGCGUUaGCGucCCGUAG-UAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 17044 0.69 0.525235
Target:  5'- gAUGCAuUCGCcGGGC-UCG-CGCGCGa -3'
miRNA:   3'- -UGCGUuAGCGuCCCGuAGUaGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.