miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17010 3' -54.1 NC_004333.2 + 6620 0.78 0.16051
Target:  5'- cCGCAGUCGCAGGuaAUCAacucgaUCGCGCu -3'
miRNA:   3'- uGCGUUAGCGUCCcgUAGU------AGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 27729 0.66 0.704725
Target:  5'- uGCGCGAUCGCGGcGCGa-AUCugGUc -3'
miRNA:   3'- -UGCGUUAGCGUCcCGUagUAGugCGu -5'
17010 3' -54.1 NC_004333.2 + 5269 0.66 0.715788
Target:  5'- gAUGCGAUaCG-GGGGCGugcUCAUCAgGCGu -3'
miRNA:   3'- -UGCGUUA-GCgUCCCGU---AGUAGUgCGU- -5'
17010 3' -54.1 NC_004333.2 + 47715 0.66 0.726763
Target:  5'- cACGC--UCGCc-GGCA-CGUCGCGCGc -3'
miRNA:   3'- -UGCGuuAGCGucCCGUaGUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 18806 0.71 0.396602
Target:  5'- cGCGCGGcCGCAGGGCG-CGUgcugcuaucgaagccCGCGCGg -3'
miRNA:   3'- -UGCGUUaGCGUCCCGUaGUA---------------GUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 28775 0.7 0.461599
Target:  5'- cGCGCgGGUCGCGGcGGCGcgacuuccCAUCGCGUAu -3'
miRNA:   3'- -UGCG-UUAGCGUC-CCGUa-------GUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 39281 0.69 0.536178
Target:  5'- cGCGCGAUCGCAGguuGGCugcUCAcccggggCugGCAg -3'
miRNA:   3'- -UGCGUUAGCGUC---CCGu--AGUa------GugCGU- -5'
17010 3' -54.1 NC_004333.2 + 40766 0.68 0.558292
Target:  5'- aGCGCAucgCGCAGaccuGGCcgCAggCACGCGu -3'
miRNA:   3'- -UGCGUua-GCGUC----CCGuaGUa-GUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 28988 0.68 0.614518
Target:  5'- uGCGCGGcCGCcGGGuCGgcgugcgCAUCGCGCGc -3'
miRNA:   3'- -UGCGUUaGCGuCCC-GUa------GUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 32077 0.66 0.693587
Target:  5'- cGCGaCGAUCGCAuagaucGGCGUCggCGCGUu -3'
miRNA:   3'- -UGC-GUUAGCGUc-----CCGUAGuaGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 10200 0.67 0.648525
Target:  5'- cGCGCAcgCGCAugcggccgucGGCAUCAaagcugCGCGCGg -3'
miRNA:   3'- -UGCGUuaGCGUc---------CCGUAGUa-----GUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 11703 0.68 0.603201
Target:  5'- gACGCAG-CGCcGGGCggCGUgCugGCGu -3'
miRNA:   3'- -UGCGUUaGCGuCCCGuaGUA-GugCGU- -5'
17010 3' -54.1 NC_004333.2 + 2796 0.77 0.179564
Target:  5'- -aGCGGUugCGCAGGGCAUCGU-ACGCGa -3'
miRNA:   3'- ugCGUUA--GCGUCCCGUAGUAgUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 20557 0.67 0.648525
Target:  5'- cGCGCcgcuGAUCGUcGGcGCGUCGggUCGCGCc -3'
miRNA:   3'- -UGCG----UUAGCGuCC-CGUAGU--AGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 16547 0.72 0.37447
Target:  5'- gGCGCAAcUGCccGGCGUCcGUCACGCu -3'
miRNA:   3'- -UGCGUUaGCGucCCGUAG-UAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 43152 0.68 0.591911
Target:  5'- uCGgGAUCGUguccGGG-AUCGUCACGCAc -3'
miRNA:   3'- uGCgUUAGCGu---CCCgUAGUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 37054 0.67 0.659843
Target:  5'- aGCGCGAUCGCgcacaugacggaGGGGUuugCGcggauUCGCGCu -3'
miRNA:   3'- -UGCGUUAGCG------------UCCCGua-GU-----AGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 5326 0.66 0.704725
Target:  5'- cGCGCcuUCGCGcuGgAUCGUCACGCc -3'
miRNA:   3'- -UGCGuuAGCGUccCgUAGUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 22008 0.71 0.392855
Target:  5'- gGCGCGAaucagCGCGcGGGCGUUuucucgacgcagAUCACGCGg -3'
miRNA:   3'- -UGCGUUa----GCGU-CCCGUAG------------UAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 36317 0.69 0.536178
Target:  5'- -aGUAGUCGCcGGGCGUCG-CAuCGCc -3'
miRNA:   3'- ugCGUUAGCGuCCCGUAGUaGU-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.