miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17011 3' -57.5 NC_004333.2 + 40234 1.12 0.000371
Target:  5'- gACUACUCGUCCGACGGCGACAGCGGCg -3'
miRNA:   3'- -UGAUGAGCAGGCUGCCGCUGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 22170 0.85 0.031411
Target:  5'- cCUugUCG-CCGGCGGCGGcCGGCGGCg -3'
miRNA:   3'- uGAugAGCaGGCUGCCGCU-GUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 43301 0.82 0.05757
Target:  5'- cGCUACaUgGUCa-GCGGCGGCAGCGGCa -3'
miRNA:   3'- -UGAUG-AgCAGgcUGCCGCUGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 48076 0.8 0.083326
Target:  5'- uGCUGCUCGgugCCGACgaGGCGcaGGCGGCa -3'
miRNA:   3'- -UGAUGAGCa--GGCUG--CCGCugUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 6869 0.77 0.13381
Target:  5'- cACUGCauugcgcagccaUCGagCGgaucGCGGCGACAGCGGCg -3'
miRNA:   3'- -UGAUG------------AGCagGC----UGCCGCUGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 29674 0.75 0.166299
Target:  5'- cGCUGCagCGUCCGuCGGCGugccggcaACGGCGGg -3'
miRNA:   3'- -UGAUGa-GCAGGCuGCCGC--------UGUCGCCg -5'
17011 3' -57.5 NC_004333.2 + 45417 0.75 0.175463
Target:  5'- gGC-ACUCGguUUCGGCGGCGGCGaCGGCg -3'
miRNA:   3'- -UGaUGAGC--AGGCUGCCGCUGUcGCCG- -5'
17011 3' -57.5 NC_004333.2 + 5207 0.74 0.200359
Target:  5'- --cGCUCGUCCGcCGGCGAgGguGCGGg -3'
miRNA:   3'- ugaUGAGCAGGCuGCCGCUgU--CGCCg -5'
17011 3' -57.5 NC_004333.2 + 11899 0.74 0.21115
Target:  5'- cCUugUCGUCgCGGCccGGCaugcGCAGCGGCg -3'
miRNA:   3'- uGAugAGCAG-GCUG--CCGc---UGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 15499 0.73 0.240329
Target:  5'- gGCUGCUCG--CGGCGGUcacCGGCGGCg -3'
miRNA:   3'- -UGAUGAGCagGCUGCCGcu-GUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 47950 0.73 0.240329
Target:  5'- aGCUGCUCGgcgcgcuggUCGuCGGCGucauCGGCGGUg -3'
miRNA:   3'- -UGAUGAGCa--------GGCuGCCGCu---GUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 7551 0.72 0.272797
Target:  5'- cUUGCUCagGUCgGACauGGCGGuCGGCGGCa -3'
miRNA:   3'- uGAUGAG--CAGgCUG--CCGCU-GUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 3558 0.72 0.286738
Target:  5'- --aACUCGgcuugCaugcGCGGCGGCAGCGGUa -3'
miRNA:   3'- ugaUGAGCa----Ggc--UGCCGCUGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 32284 0.71 0.293916
Target:  5'- --cGCaUCGUCuaCGAUGGCGgucACGGCGGCu -3'
miRNA:   3'- ugaUG-AGCAG--GCUGCCGC---UGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 20162 0.71 0.315524
Target:  5'- cCUACUCGgccgCCGGCucgGGCGcACacaagaaGGCGGCa -3'
miRNA:   3'- uGAUGAGCa---GGCUG---CCGC-UG-------UCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 18498 0.71 0.31629
Target:  5'- gUUGC-CGgcacgCCGACGGaCGcuGCAGCGGCc -3'
miRNA:   3'- uGAUGaGCa----GGCUGCC-GC--UGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 8043 0.71 0.324028
Target:  5'- --gACUCG-CCGACGaGCu-CGGCGGCc -3'
miRNA:   3'- ugaUGAGCaGGCUGC-CGcuGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 39297 0.7 0.345619
Target:  5'- gGCUGCUCacccggggcuggcagCCGAuucgcuCGGCGGCGGCGcGCu -3'
miRNA:   3'- -UGAUGAGca-------------GGCU------GCCGCUGUCGC-CG- -5'
17011 3' -57.5 NC_004333.2 + 25416 0.7 0.348081
Target:  5'- cCUGCagCGUgCCGGCGGCGGCcgucacgccgGGCGuGCc -3'
miRNA:   3'- uGAUGa-GCA-GGCUGCCGCUG----------UCGC-CG- -5'
17011 3' -57.5 NC_004333.2 + 34409 0.7 0.356377
Target:  5'- aACUACaCG-CCGcGCGaGCGGCGcGCGGCg -3'
miRNA:   3'- -UGAUGaGCaGGC-UGC-CGCUGU-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.