miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17011 3' -57.5 NC_004333.2 + 677 0.66 0.601943
Target:  5'- uACUGgUCGcgCCGGcCGGCGccucguucaGC-GCGGCa -3'
miRNA:   3'- -UGAUgAGCa-GGCU-GCCGC---------UGuCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 1503 0.67 0.496343
Target:  5'- aACUGCgCGagCGACGGCGAguCGGCcuGCa -3'
miRNA:   3'- -UGAUGaGCagGCUGCCGCU--GUCGc-CG- -5'
17011 3' -57.5 NC_004333.2 + 2412 0.68 0.47616
Target:  5'- cCUGgUCG-CCGuACaGCGGCAGCGuGCc -3'
miRNA:   3'- uGAUgAGCaGGC-UGcCGCUGUCGC-CG- -5'
17011 3' -57.5 NC_004333.2 + 2684 0.67 0.52731
Target:  5'- uGCaGCgUCGcgCCGGCGGCGGCcGacaGGCc -3'
miRNA:   3'- -UGaUG-AGCa-GGCUGCCGCUGuCg--CCG- -5'
17011 3' -57.5 NC_004333.2 + 3299 0.68 0.47616
Target:  5'- uCUcCUUGUgCGcGCGGCGGCGcGCGGUu -3'
miRNA:   3'- uGAuGAGCAgGC-UGCCGCUGU-CGCCG- -5'
17011 3' -57.5 NC_004333.2 + 3517 0.67 0.537795
Target:  5'- aGCUGCUgCGgCUGAuCGGCGuaaAGCGGg -3'
miRNA:   3'- -UGAUGA-GCaGGCU-GCCGCug-UCGCCg -5'
17011 3' -57.5 NC_004333.2 + 3558 0.72 0.286738
Target:  5'- --aACUCGgcuugCaugcGCGGCGGCAGCGGUa -3'
miRNA:   3'- ugaUGAGCa----Ggc--UGCCGCUGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 5207 0.74 0.200359
Target:  5'- --cGCUCGUCCGcCGGCGAgGguGCGGg -3'
miRNA:   3'- ugaUGAGCAGGCuGCCGCUgU--CGCCg -5'
17011 3' -57.5 NC_004333.2 + 6869 0.77 0.13381
Target:  5'- cACUGCauugcgcagccaUCGagCGgaucGCGGCGACAGCGGCg -3'
miRNA:   3'- -UGAUG------------AGCagGC----UGCCGCUGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 7456 0.69 0.418239
Target:  5'- aGCgACUUGccgCCGcCGGUGACGaucGCGGCg -3'
miRNA:   3'- -UGaUGAGCa--GGCuGCCGCUGU---CGCCG- -5'
17011 3' -57.5 NC_004333.2 + 7551 0.72 0.272797
Target:  5'- cUUGCUCagGUCgGACauGGCGGuCGGCGGCa -3'
miRNA:   3'- uGAUGAG--CAGgCUG--CCGCU-GUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 8043 0.71 0.324028
Target:  5'- --gACUCG-CCGACGaGCu-CGGCGGCc -3'
miRNA:   3'- ugaUGAGCaGGCUGC-CGcuGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 8664 0.67 0.515867
Target:  5'- cUUGCUCGUgacggugCCGuCGGCGuuCAGCacGGCg -3'
miRNA:   3'- uGAUGAGCA-------GGCuGCCGCu-GUCG--CCG- -5'
17011 3' -57.5 NC_004333.2 + 8983 0.69 0.418239
Target:  5'- --gGC-CGUgCgCGGCGGCGACcgacGCGGCg -3'
miRNA:   3'- ugaUGaGCA-G-GCUGCCGCUGu---CGCCG- -5'
17011 3' -57.5 NC_004333.2 + 9347 0.67 0.506578
Target:  5'- -aUGCUCGUCguCGGCGcGCGGCGuCGGg -3'
miRNA:   3'- ugAUGAGCAG--GCUGC-CGCUGUcGCCg -5'
17011 3' -57.5 NC_004333.2 + 10983 0.7 0.356377
Target:  5'- --aACUCGgcaCCGGCGcGCgucGugAGCGGCg -3'
miRNA:   3'- ugaUGAGCa--GGCUGC-CG---CugUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 11899 0.74 0.21115
Target:  5'- cCUugUCGUCgCGGCccGGCaugcGCAGCGGCg -3'
miRNA:   3'- uGAugAGCAG-GCUG--CCGc---UGUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 12282 0.68 0.446678
Target:  5'- -gUACaCGgcaCCGGCGGCGcGCAuuGCGGCg -3'
miRNA:   3'- ugAUGaGCa--GGCUGCCGC-UGU--CGCCG- -5'
17011 3' -57.5 NC_004333.2 + 12811 0.67 0.537795
Target:  5'- -gUGC-CGUCaGGCGGCuuGGgGGCGGCu -3'
miRNA:   3'- ugAUGaGCAGgCUGCCG--CUgUCGCCG- -5'
17011 3' -57.5 NC_004333.2 + 13507 0.68 0.456394
Target:  5'- uCUGCUucagcuggucgcCGUCCGACGugcucGCGGCguugccgccGGCGGCc -3'
miRNA:   3'- uGAUGA------------GCAGGCUGC-----CGCUG---------UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.