miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 3' -49.8 NC_004333.2 + 34289 0.67 0.904902
Target:  5'- gCGCAGCccGUgcCGGccGACUUCGCGCGGc -3'
miRNA:   3'- -GUGUUGcaUAa-GUC--UUGGAGCGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 35135 0.71 0.706302
Target:  5'- -uCAGCGUGUcgggcaUCuugauGGACCUCGCGCaGGc -3'
miRNA:   3'- guGUUGCAUA------AGu----CUUGGAGCGCG-CC- -5'
17013 3' -49.8 NC_004333.2 + 35547 0.69 0.840387
Target:  5'- uGCGGCGg--UCAGAACUUgGCcCGGu -3'
miRNA:   3'- gUGUUGCauaAGUCUUGGAgCGcGCC- -5'
17013 3' -49.8 NC_004333.2 + 36289 0.66 0.951044
Target:  5'- cCGCGACGaca--AGGugCUCGCGCc- -3'
miRNA:   3'- -GUGUUGCauaagUCUugGAGCGCGcc -5'
17013 3' -49.8 NC_004333.2 + 37365 0.71 0.728491
Target:  5'- aCGCGACGUG--CAccGCgUCGCGCGGc -3'
miRNA:   3'- -GUGUUGCAUaaGUcuUGgAGCGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 37728 0.67 0.897804
Target:  5'- gGCGGCGUGUgUCAGAGCggcuuugagUUUGUGCGa -3'
miRNA:   3'- gUGUUGCAUA-AGUCUUG---------GAGCGCGCc -5'
17013 3' -49.8 NC_004333.2 + 38224 0.67 0.911708
Target:  5'- aCACAACGUgcgGUUC-GAcggcaaacACCU-GCGCGGc -3'
miRNA:   3'- -GUGUUGCA---UAAGuCU--------UGGAgCGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 38463 0.69 0.821727
Target:  5'- aCGCGGCGU-UUCGcGAACCgCGUGCGc -3'
miRNA:   3'- -GUGUUGCAuAAGU-CUUGGaGCGCGCc -5'
17013 3' -49.8 NC_004333.2 + 39931 1.12 0.00223
Target:  5'- gCACAACGUAUUCAGAACCUCGCGCGGg -3'
miRNA:   3'- -GUGUUGCAUAAGUCUUGGAGCGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 44290 0.66 0.945821
Target:  5'- gCACAAUGcgccGUUCgacuucuggauuuGGAACCUCGUucuGCGGc -3'
miRNA:   3'- -GUGUUGCa---UAAG-------------UCUUGGAGCG---CGCC- -5'
17013 3' -49.8 NC_004333.2 + 46532 0.67 0.911708
Target:  5'- gCGCAGCGcAUUCAGGGCUaCGcCGCc- -3'
miRNA:   3'- -GUGUUGCaUAAGUCUUGGaGC-GCGcc -5'
17013 3' -49.8 NC_004333.2 + 47043 0.66 0.94631
Target:  5'- uGCAACGUcgcgcgCAGcacggcaccGACUUCGCGCGc -3'
miRNA:   3'- gUGUUGCAuaa---GUC---------UUGGAGCGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.