miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 3' -49.8 NC_004333.2 + 529 0.68 0.866584
Target:  5'- -uCGACGcauuuuUUCAuGugCUCGCGCGGa -3'
miRNA:   3'- guGUUGCau----AAGUcUugGAGCGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 3382 0.69 0.849368
Target:  5'- uCGCGGCGUAUUCcuuGAuCUUCGCGaccuCGGu -3'
miRNA:   3'- -GUGUUGCAUAAGu--CUuGGAGCGC----GCC- -5'
17013 3' -49.8 NC_004333.2 + 3677 0.68 0.890418
Target:  5'- uCGCGACGg--UCuGAGCCgUCGCgucguagcuGCGGa -3'
miRNA:   3'- -GUGUUGCauaAGuCUUGG-AGCG---------CGCC- -5'
17013 3' -49.8 NC_004333.2 + 4656 0.73 0.638253
Target:  5'- gGCGACGgg--CAG-GCCggCGCGCGGg -3'
miRNA:   3'- gUGUUGCauaaGUCuUGGa-GCGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 9255 0.66 0.930347
Target:  5'- uCGCcGCGUGcggCAuAGCCuUCGUGCGGa -3'
miRNA:   3'- -GUGuUGCAUaa-GUcUUGG-AGCGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 10967 0.67 0.897804
Target:  5'- cCACAGCGUcgcgCGGAACUcggcaccggCGCGCGu -3'
miRNA:   3'- -GUGUUGCAuaa-GUCUUGGa--------GCGCGCc -5'
17013 3' -49.8 NC_004333.2 + 11898 0.67 0.904902
Target:  5'- uCGCAugGcg--CAGGACgUCGCGUGu -3'
miRNA:   3'- -GUGUugCauaaGUCUUGgAGCGCGCc -5'
17013 3' -49.8 NC_004333.2 + 12276 0.66 0.941284
Target:  5'- gACAACGUAcaCGGcACCggcggCGCGCa- -3'
miRNA:   3'- gUGUUGCAUaaGUCuUGGa----GCGCGcc -5'
17013 3' -49.8 NC_004333.2 + 12306 0.74 0.558707
Target:  5'- uGCGGCGUccugCGcgccAGCCUCGCGCGGg -3'
miRNA:   3'- gUGUUGCAuaa-GUc---UUGGAGCGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 13195 0.7 0.760963
Target:  5'- aUACGAuCGUGUgCAGGcGCgUCGCGUGGa -3'
miRNA:   3'- -GUGUU-GCAUAaGUCU-UGgAGCGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 14844 0.68 0.890418
Target:  5'- cCACGGCGUGccgaUCAGAAUgaCGC-CGGa -3'
miRNA:   3'- -GUGUUGCAUa---AGUCUUGgaGCGcGCC- -5'
17013 3' -49.8 NC_004333.2 + 17428 0.68 0.874802
Target:  5'- gUACAGCG-AUUCGGugaguACCUCG-GCGa -3'
miRNA:   3'- -GUGUUGCaUAAGUCu----UGGAGCgCGCc -5'
17013 3' -49.8 NC_004333.2 + 18366 0.66 0.935964
Target:  5'- aACGGCGUG-UCGuuuAACCUCGC-CGGc -3'
miRNA:   3'- gUGUUGCAUaAGUc--UUGGAGCGcGCC- -5'
17013 3' -49.8 NC_004333.2 + 18441 0.68 0.874802
Target:  5'- aGCGGCGUG--CAGAACUaCGCgaGCGGu -3'
miRNA:   3'- gUGUUGCAUaaGUCUUGGaGCG--CGCC- -5'
17013 3' -49.8 NC_004333.2 + 22761 0.67 0.924432
Target:  5'- gGCGACGUcguAUUCAGGACUgcguUCGaUGCGc -3'
miRNA:   3'- gUGUUGCA---UAAGUCUUGG----AGC-GCGCc -5'
17013 3' -49.8 NC_004333.2 + 23870 0.67 0.924432
Target:  5'- gACGACGacGUUCGGGuucguGCCgccguucaUCGUGCGGa -3'
miRNA:   3'- gUGUUGCa-UAAGUCU-----UGG--------AGCGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 25709 0.66 0.935964
Target:  5'- gCugGACaccaUGUUCAcGAGCCUCGgGCaGGu -3'
miRNA:   3'- -GugUUGc---AUAAGU-CUUGGAGCgCG-CC- -5'
17013 3' -49.8 NC_004333.2 + 27190 0.72 0.6838
Target:  5'- -cCGAgGUGUggcggCAGAccguGCUUCGCGCGGu -3'
miRNA:   3'- guGUUgCAUAa----GUCU----UGGAGCGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 28281 0.67 0.924432
Target:  5'- gACGGCGcggAUggccCAGAGCUgcugaGCGCGGg -3'
miRNA:   3'- gUGUUGCa--UAa---GUCUUGGag---CGCGCC- -5'
17013 3' -49.8 NC_004333.2 + 30853 0.66 0.941284
Target:  5'- aUACAGCGcgaUCAGAucauCCUCGgGCa- -3'
miRNA:   3'- -GUGUUGCauaAGUCUu---GGAGCgCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.