Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17013 | 3' | -49.8 | NC_004333.2 | + | 37365 | 0.71 | 0.728491 |
Target: 5'- aCGCGACGUG--CAccGCgUCGCGCGGc -3' miRNA: 3'- -GUGUUGCAUaaGUcuUGgAGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 4656 | 0.73 | 0.638253 |
Target: 5'- gGCGACGgg--CAG-GCCggCGCGCGGg -3' miRNA: 3'- gUGUUGCauaaGUCuUGGa-GCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 12306 | 0.74 | 0.558707 |
Target: 5'- uGCGGCGUccugCGcgccAGCCUCGCGCGGg -3' miRNA: 3'- gUGUUGCAuaa-GUc---UUGGAGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 9255 | 0.66 | 0.930347 |
Target: 5'- uCGCcGCGUGcggCAuAGCCuUCGUGCGGa -3' miRNA: 3'- -GUGuUGCAUaa-GUcUUGG-AGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 22761 | 0.67 | 0.924432 |
Target: 5'- gGCGACGUcguAUUCAGGACUgcguUCGaUGCGc -3' miRNA: 3'- gUGUUGCA---UAAGUCUUGG----AGC-GCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 14844 | 0.68 | 0.890418 |
Target: 5'- cCACGGCGUGccgaUCAGAAUgaCGC-CGGa -3' miRNA: 3'- -GUGUUGCAUa---AGUCUUGgaGCGcGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 44290 | 0.66 | 0.945821 |
Target: 5'- gCACAAUGcgccGUUCgacuucuggauuuGGAACCUCGUucuGCGGc -3' miRNA: 3'- -GUGUUGCa---UAAG-------------UCUUGGAGCG---CGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 12276 | 0.66 | 0.941284 |
Target: 5'- gACAACGUAcaCGGcACCggcggCGCGCa- -3' miRNA: 3'- gUGUUGCAUaaGUCuUGGa----GCGCGcc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 23870 | 0.67 | 0.924432 |
Target: 5'- gACGACGacGUUCGGGuucguGCCgccguucaUCGUGCGGa -3' miRNA: 3'- gUGUUGCa-UAAGUCU-----UGG--------AGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 3677 | 0.68 | 0.890418 |
Target: 5'- uCGCGACGg--UCuGAGCCgUCGCgucguagcuGCGGa -3' miRNA: 3'- -GUGUUGCauaAGuCUUGG-AGCG---------CGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 13195 | 0.7 | 0.760963 |
Target: 5'- aUACGAuCGUGUgCAGGcGCgUCGCGUGGa -3' miRNA: 3'- -GUGUU-GCAUAaGUCU-UGgAGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 35547 | 0.69 | 0.840387 |
Target: 5'- uGCGGCGg--UCAGAACUUgGCcCGGu -3' miRNA: 3'- gUGUUGCauaAGUCUUGGAgCGcGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 18366 | 0.66 | 0.935964 |
Target: 5'- aACGGCGUG-UCGuuuAACCUCGC-CGGc -3' miRNA: 3'- gUGUUGCAUaAGUc--UUGGAGCGcGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 27190 | 0.72 | 0.6838 |
Target: 5'- -cCGAgGUGUggcggCAGAccguGCUUCGCGCGGu -3' miRNA: 3'- guGUUgCAUAa----GUCU----UGGAGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 3382 | 0.69 | 0.849368 |
Target: 5'- uCGCGGCGUAUUCcuuGAuCUUCGCGaccuCGGu -3' miRNA: 3'- -GUGUUGCAUAAGu--CUuGGAGCGC----GCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 529 | 0.68 | 0.866584 |
Target: 5'- -uCGACGcauuuuUUCAuGugCUCGCGCGGa -3' miRNA: 3'- guGUUGCau----AAGUcUugGAGCGCGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 17428 | 0.68 | 0.874802 |
Target: 5'- gUACAGCG-AUUCGGugaguACCUCG-GCGa -3' miRNA: 3'- -GUGUUGCaUAAGUCu----UGGAGCgCGCc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 18441 | 0.68 | 0.874802 |
Target: 5'- aGCGGCGUG--CAGAACUaCGCgaGCGGu -3' miRNA: 3'- gUGUUGCAUaaGUCUUGGaGCG--CGCC- -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 30853 | 0.66 | 0.941284 |
Target: 5'- aUACAGCGcgaUCAGAucauCCUCGgGCa- -3' miRNA: 3'- -GUGUUGCauaAGUCUu---GGAGCgCGcc -5' |
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17013 | 3' | -49.8 | NC_004333.2 | + | 46532 | 0.67 | 0.911708 |
Target: 5'- gCGCAGCGcAUUCAGGGCUaCGcCGCc- -3' miRNA: 3'- -GUGUUGCaUAAGUCUUGGaGC-GCGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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