miRNA display CGI


Results 21 - 40 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 5' -52.6 NC_004333.2 + 9729 0.67 0.76147
Target:  5'- cGUCGCGCcacGGaucgacaaaGUUCGAcgcggcaAGCGUCUCGa -3'
miRNA:   3'- aCGGCGCG---UCg--------CAAGUU-------UUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 10087 0.66 0.803293
Target:  5'- aUGCCGgGUaAGcCGUUCAGcaucACGaUCUCGg -3'
miRNA:   3'- -ACGGCgCG-UC-GCAAGUUu---UGC-AGAGC- -5'
17013 5' -52.6 NC_004333.2 + 11047 0.68 0.686206
Target:  5'- cGUCGUGCGGCGU---GAGCGcUUCGa -3'
miRNA:   3'- aCGGCGCGUCGCAaguUUUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 11665 0.66 0.803293
Target:  5'- aGUCGCGCAgGCGcUUCAuuuCGUCg-- -3'
miRNA:   3'- aCGGCGCGU-CGC-AAGUuuuGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 11710 0.71 0.529173
Target:  5'- cGCCGgGCGGCGUgcu-GGCGUCcugCGc -3'
miRNA:   3'- aCGGCgCGUCGCAaguuUUGCAGa--GC- -5'
17013 5' -52.6 NC_004333.2 + 12091 0.66 0.803293
Target:  5'- cUGgCGCGCAGCGccgCGucACGggccagCUCGu -3'
miRNA:   3'- -ACgGCGCGUCGCaa-GUuuUGCa-----GAGC- -5'
17013 5' -52.6 NC_004333.2 + 12480 0.68 0.730414
Target:  5'- aGCCGa-CAcucGCGUUCGcgacugaaGGGCGUCUCGa -3'
miRNA:   3'- aCGGCgcGU---CGCAAGU--------UUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 13471 0.66 0.813041
Target:  5'- cGUCGCGaaugcgcaGGCGUUCGAucuCGUCaUUGa -3'
miRNA:   3'- aCGGCGCg-------UCGCAAGUUuu-GCAG-AGC- -5'
17013 5' -52.6 NC_004333.2 + 13545 0.67 0.772957
Target:  5'- uUGCCGC-CGGCGgcCAGgccgGAUGUgUCGg -3'
miRNA:   3'- -ACGGCGcGUCGCaaGUU----UUGCAgAGC- -5'
17013 5' -52.6 NC_004333.2 + 13773 0.66 0.813041
Target:  5'- cGCuCGCGCGGCGUgUAGuugcucACGUCcacuUCGa -3'
miRNA:   3'- aCG-GCGCGUCGCAaGUUu-----UGCAG----AGC- -5'
17013 5' -52.6 NC_004333.2 + 13991 0.71 0.518299
Target:  5'- aGCUGCGC-GCGcUUCuuuGCGUUUCGa -3'
miRNA:   3'- aCGGCGCGuCGC-AAGuuuUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 14320 0.72 0.454141
Target:  5'- gGCUGCaGCAGCGUggguuauUCGAGACaaUCUCGg -3'
miRNA:   3'- aCGGCG-CGUCGCA-------AGUUUUGc-AGAGC- -5'
17013 5' -52.6 NC_004333.2 + 15143 0.72 0.475767
Target:  5'- cGCaCGUGCGGCGcUCAAAGCGa-UCGa -3'
miRNA:   3'- aCG-GCGCGUCGCaAGUUUUGCagAGC- -5'
17013 5' -52.6 NC_004333.2 + 16817 0.66 0.793355
Target:  5'- cGCCGgGUgucgaAGCGUUCGuauCG-CUCGa -3'
miRNA:   3'- aCGGCgCG-----UCGCAAGUuuuGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 17232 0.66 0.813041
Target:  5'- gGCCGC-CGGCGUaUCGccGGACGUgaUCGu -3'
miRNA:   3'- aCGGCGcGUCGCA-AGU--UUUGCAg-AGC- -5'
17013 5' -52.6 NC_004333.2 + 17298 0.66 0.793355
Target:  5'- gGCCgGCGCAGCGUccUCGAcAUGcC-CGa -3'
miRNA:   3'- aCGG-CGCGUCGCA--AGUUuUGCaGaGC- -5'
17013 5' -52.6 NC_004333.2 + 17403 0.69 0.671611
Target:  5'- cUGCuCGCGCAGCGcggucacgacgcgcUgacgaUCAAAACGUCgccCGg -3'
miRNA:   3'- -ACG-GCGCGUCGC--------------A-----AGUUUUGCAGa--GC- -5'
17013 5' -52.6 NC_004333.2 + 19204 0.71 0.528081
Target:  5'- gGCCGCGCAacugaucgccGCGUUCGAccGCGUgaacaacgcgugcCUCGg -3'
miRNA:   3'- aCGGCGCGU----------CGCAAGUUu-UGCA-------------GAGC- -5'
17013 5' -52.6 NC_004333.2 + 19411 0.66 0.831923
Target:  5'- cGCCGCGacccGCGcggUCGAcGCGgcgCUCGc -3'
miRNA:   3'- aCGGCGCgu--CGCa--AGUUuUGCa--GAGC- -5'
17013 5' -52.6 NC_004333.2 + 20499 0.68 0.708468
Target:  5'- cGCUGCaGC-GCGUUCAGGugcGCGaCUCGc -3'
miRNA:   3'- aCGGCG-CGuCGCAAGUUU---UGCaGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.