miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 5' -52.6 NC_004333.2 + 433 0.68 0.69737
Target:  5'- gGCUGCGCGGCaGUgCGGAACGcaaUCUUc -3'
miRNA:   3'- aCGGCGCGUCG-CAaGUUUUGC---AGAGc -5'
17013 5' -52.6 NC_004333.2 + 998 0.69 0.674986
Target:  5'- cUGCUGCGCGgcagcGCGUUCuuccGGCGUCa-- -3'
miRNA:   3'- -ACGGCGCGU-----CGCAAGuu--UUGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 1819 0.66 0.793355
Target:  5'- gGCCGCGCcaaauccgcAGCGgcgCAuAACGgcgcccgCUCGu -3'
miRNA:   3'- aCGGCGCG---------UCGCaa-GUuUUGCa------GAGC- -5'
17013 5' -52.6 NC_004333.2 + 2476 0.68 0.69737
Target:  5'- aGCCGCGU--UGUUCGAGACGa-UCGa -3'
miRNA:   3'- aCGGCGCGucGCAAGUUUUGCagAGC- -5'
17013 5' -52.6 NC_004333.2 + 2914 0.72 0.486243
Target:  5'- gUGCUGCGCAGCGgUCGuGAcCGUCa-- -3'
miRNA:   3'- -ACGGCGCGUCGCaAGUuUU-GCAGagc -5'
17013 5' -52.6 NC_004333.2 + 2960 0.66 0.822588
Target:  5'- aGCUGCGCgAGCGUgacgcccgUCAAcggaaugccuaGACG-CUCGc -3'
miRNA:   3'- aCGGCGCG-UCGCA--------AGUU-----------UUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 3067 0.71 0.507515
Target:  5'- cGCCGCGCAGacaGgcgUCGAGuauCGcCUCGc -3'
miRNA:   3'- aCGGCGCGUCg--Ca--AGUUUu--GCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 3126 0.8 0.149262
Target:  5'- gGCCGCGCGGUGUUCA--GCGUUUgCGc -3'
miRNA:   3'- aCGGCGCGUCGCAAGUuuUGCAGA-GC- -5'
17013 5' -52.6 NC_004333.2 + 3318 0.73 0.445038
Target:  5'- uUGUCGCGCgcGGCGaucUUCuucAGCGUCUCGc -3'
miRNA:   3'- -ACGGCGCG--UCGC---AAGuu-UUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 3556 0.67 0.77192
Target:  5'- gUGCCGCGCAGC-------GCGUCggcCGa -3'
miRNA:   3'- -ACGGCGCGUCGcaaguuuUGCAGa--GC- -5'
17013 5' -52.6 NC_004333.2 + 3955 0.66 0.813041
Target:  5'- cGCCGUucuGCAG-GUagGAgagcAGCGUCUCGa -3'
miRNA:   3'- aCGGCG---CGUCgCAagUU----UUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 4256 0.69 0.674986
Target:  5'- aUGCCGCGCA-CGUUCGu-GCGcC-CGg -3'
miRNA:   3'- -ACGGCGCGUcGCAAGUuuUGCaGaGC- -5'
17013 5' -52.6 NC_004333.2 + 4589 0.72 0.496828
Target:  5'- uUGCuCGCGCAcucGCGUUCGAGGCGagCgcgCGa -3'
miRNA:   3'- -ACG-GCGCGU---CGCAAGUUUUGCa-Ga--GC- -5'
17013 5' -52.6 NC_004333.2 + 7052 0.72 0.496828
Target:  5'- cUGUgCGCGCAGCucgUCGAugaugauguuGACGUCUCGc -3'
miRNA:   3'- -ACG-GCGCGUCGca-AGUU----------UUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 7114 0.68 0.686206
Target:  5'- cGCaCGUGCggauuGGCGgcgCGAAACGUgUCGa -3'
miRNA:   3'- aCG-GCGCG-----UCGCaa-GUUUUGCAgAGC- -5'
17013 5' -52.6 NC_004333.2 + 7810 0.69 0.629794
Target:  5'- gGCCGCGCGGCGUgugCAc--CGUUa-- -3'
miRNA:   3'- aCGGCGCGUCGCAa--GUuuuGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 8171 0.71 0.555593
Target:  5'- gGCCGCGUccaucGCGUacucagugagcggcgUCGAGACGUUUUGa -3'
miRNA:   3'- aCGGCGCGu----CGCA---------------AGUUUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 8677 0.67 0.772957
Target:  5'- gUGCCGU-CGGCGUUCAGcACGg--CGa -3'
miRNA:   3'- -ACGGCGcGUCGCAAGUUuUGCagaGC- -5'
17013 5' -52.6 NC_004333.2 + 8998 0.69 0.663723
Target:  5'- cGaCCGaCGCGGCGUUCGcggcuugccAGGCGgcgcgCUCGc -3'
miRNA:   3'- aC-GGC-GCGUCGCAAGU---------UUUGCa----GAGC- -5'
17013 5' -52.6 NC_004333.2 + 9005 0.7 0.58463
Target:  5'- aGCgCGCGCAGCacgggcggCAGGAUGUCgUCGa -3'
miRNA:   3'- aCG-GCGCGUCGcaa-----GUUUUGCAG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.