miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 5' -52.6 NC_004333.2 + 39970 1.1 0.001412
Target:  5'- cUGCCGCGCAGCGUUCAAAACGUCUCGa -3'
miRNA:   3'- -ACGGCGCGUCGCAAGUUUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 3126 0.8 0.149262
Target:  5'- gGCCGCGCGGUGUUCA--GCGUUUgCGc -3'
miRNA:   3'- aCGGCGCGUCGCAAGUuuUGCAGA-GC- -5'
17013 5' -52.6 NC_004333.2 + 31241 0.79 0.181693
Target:  5'- gGCCGCGCGGCGcagCGc--CGUCUCGg -3'
miRNA:   3'- aCGGCGCGUCGCaa-GUuuuGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 37115 0.76 0.265472
Target:  5'- aGCUGCGgGGCGUgcUCGAAGCG-CUCa -3'
miRNA:   3'- aCGGCGCgUCGCA--AGUUUUGCaGAGc -5'
17013 5' -52.6 NC_004333.2 + 21791 0.76 0.270392
Target:  5'- gUGCCGCGCgaguggcagcugaaAGCGUUCGAGGCauucCUCGa -3'
miRNA:   3'- -ACGGCGCG--------------UCGCAAGUUUUGca--GAGC- -5'
17013 5' -52.6 NC_004333.2 + 22989 0.76 0.294572
Target:  5'- aGUCGCGCAGCGagUUCGAGACG-CggCGg -3'
miRNA:   3'- aCGGCGCGUCGC--AAGUUUUGCaGa-GC- -5'
17013 5' -52.6 NC_004333.2 + 34314 0.73 0.405861
Target:  5'- cGCgGCGCGGCGcgcUCAAuGCG-CUCGa -3'
miRNA:   3'- aCGgCGCGUCGCa--AGUUuUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 30239 0.73 0.415452
Target:  5'- cGCCGCGCGcgaucaguGCGUUCAuGACGUacaggCGa -3'
miRNA:   3'- aCGGCGCGU--------CGCAAGUuUUGCAga---GC- -5'
17013 5' -52.6 NC_004333.2 + 27217 0.73 0.42518
Target:  5'- cGCCGCGC-GCGUUU---GCGUC-CGg -3'
miRNA:   3'- aCGGCGCGuCGCAAGuuuUGCAGaGC- -5'
17013 5' -52.6 NC_004333.2 + 45275 0.73 0.434051
Target:  5'- cGCUGCGCAGC-------ACGUCUCGg -3'
miRNA:   3'- aCGGCGCGUCGcaaguuuUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 27047 0.73 0.435043
Target:  5'- uUGCgCGCGCu-CGUUCAGGGCG-CUCGc -3'
miRNA:   3'- -ACG-GCGCGucGCAAGUUUUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 3318 0.73 0.445038
Target:  5'- uUGUCGCGCgcGGCGaucUUCuucAGCGUCUCGc -3'
miRNA:   3'- -ACGGCGCG--UCGC---AAGuu-UUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 14320 0.72 0.454141
Target:  5'- gGCUGCaGCAGCGUggguuauUCGAGACaaUCUCGg -3'
miRNA:   3'- aCGGCG-CGUCGCA-------AGUUUUGc-AGAGC- -5'
17013 5' -52.6 NC_004333.2 + 15143 0.72 0.475767
Target:  5'- cGCaCGUGCGGCGcUCAAAGCGa-UCGa -3'
miRNA:   3'- aCG-GCGCGUCGCaAGUUUUGCagAGC- -5'
17013 5' -52.6 NC_004333.2 + 2914 0.72 0.486243
Target:  5'- gUGCUGCGCAGCGgUCGuGAcCGUCa-- -3'
miRNA:   3'- -ACGGCGCGUCGCaAGUuUU-GCAGagc -5'
17013 5' -52.6 NC_004333.2 + 4589 0.72 0.496828
Target:  5'- uUGCuCGCGCAcucGCGUUCGAGGCGagCgcgCGa -3'
miRNA:   3'- -ACG-GCGCGU---CGCAAGUUUUGCa-Ga--GC- -5'
17013 5' -52.6 NC_004333.2 + 30808 0.72 0.496828
Target:  5'- aUGuuGCGCAGguUGUUCGAGACGg-UCGa -3'
miRNA:   3'- -ACggCGCGUC--GCAAGUUUUGCagAGC- -5'
17013 5' -52.6 NC_004333.2 + 7052 0.72 0.496828
Target:  5'- cUGUgCGCGCAGCucgUCGAugaugauguuGACGUCUCGc -3'
miRNA:   3'- -ACG-GCGCGUCGca-AGUU----------UUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 3067 0.71 0.507515
Target:  5'- cGCCGCGCAGacaGgcgUCGAGuauCGcCUCGc -3'
miRNA:   3'- aCGGCGCGUCg--Ca--AGUUUu--GCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 34416 0.71 0.518299
Target:  5'- cGCCGCGCgAGCGgcgCGcgGCGUCcuacgcgcUCGa -3'
miRNA:   3'- aCGGCGCG-UCGCaa-GUuuUGCAG--------AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.