miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 5' -52.6 NC_004333.2 + 31241 0.79 0.181693
Target:  5'- gGCCGCGCGGCGcagCGc--CGUCUCGg -3'
miRNA:   3'- aCGGCGCGUCGCaa-GUuuuGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 433 0.68 0.69737
Target:  5'- gGCUGCGCGGCaGUgCGGAACGcaaUCUUc -3'
miRNA:   3'- aCGGCGCGUCG-CAaGUUUUGC---AGAGc -5'
17013 5' -52.6 NC_004333.2 + 47189 0.68 0.69737
Target:  5'- cUGCCGCGCAGCa--CGAGGCacaaGUCgccgCGa -3'
miRNA:   3'- -ACGGCGCGUCGcaaGUUUUG----CAGa---GC- -5'
17013 5' -52.6 NC_004333.2 + 39835 0.66 0.831923
Target:  5'- cUGCCGUGauccaggaAGUGUUCAAGACGa---- -3'
miRNA:   3'- -ACGGCGCg-------UCGCAAGUUUUGCagagc -5'
17013 5' -52.6 NC_004333.2 + 2914 0.72 0.486243
Target:  5'- gUGCUGCGCAGCGgUCGuGAcCGUCa-- -3'
miRNA:   3'- -ACGGCGCGUCGCaAGUuUU-GCAGagc -5'
17013 5' -52.6 NC_004333.2 + 7052 0.72 0.496828
Target:  5'- cUGUgCGCGCAGCucgUCGAugaugauguuGACGUCUCGc -3'
miRNA:   3'- -ACG-GCGCGUCGca-AGUU----------UUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 13991 0.71 0.518299
Target:  5'- aGCUGCGC-GCGcUUCuuuGCGUUUCGa -3'
miRNA:   3'- aCGGCGCGuCGC-AAGuuuUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 11710 0.71 0.529173
Target:  5'- cGCCGgGCGGCGUgcu-GGCGUCcugCGc -3'
miRNA:   3'- aCGGCgCGUCGCAaguuUUGCAGa--GC- -5'
17013 5' -52.6 NC_004333.2 + 40955 0.69 0.663723
Target:  5'- gGUCGCaCGGCaggCGAAACGUUUCGg -3'
miRNA:   3'- aCGGCGcGUCGcaaGUUUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 45071 0.68 0.694027
Target:  5'- gGCCGCGCccgggcaagaaaacGGCGgacugCGAGGCGauaCUCGa -3'
miRNA:   3'- aCGGCGCG--------------UCGCaa---GUUUUGCa--GAGC- -5'
17013 5' -52.6 NC_004333.2 + 17403 0.69 0.671611
Target:  5'- cUGCuCGCGCAGCGcggucacgacgcgcUgacgaUCAAAACGUCgccCGg -3'
miRNA:   3'- -ACG-GCGCGUCGC--------------A-----AGUUUUGCAGa--GC- -5'
17013 5' -52.6 NC_004333.2 + 32539 0.7 0.607166
Target:  5'- cGUCGCGCGGCGcgCuc-GCGUCg-- -3'
miRNA:   3'- aCGGCGCGUCGCaaGuuuUGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 37115 0.76 0.265472
Target:  5'- aGCUGCGgGGCGUgcUCGAAGCG-CUCa -3'
miRNA:   3'- aCGGCGCgUCGCA--AGUUUUGCaGAGc -5'
17013 5' -52.6 NC_004333.2 + 4256 0.69 0.674986
Target:  5'- aUGCCGCGCA-CGUUCGu-GCGcC-CGg -3'
miRNA:   3'- -ACGGCGCGUcGCAAGUuuUGCaGaGC- -5'
17013 5' -52.6 NC_004333.2 + 21791 0.76 0.270392
Target:  5'- gUGCCGCGCgaguggcagcugaaAGCGUUCGAGGCauucCUCGa -3'
miRNA:   3'- -ACGGCGCG--------------UCGCAAGUUUUGca--GAGC- -5'
17013 5' -52.6 NC_004333.2 + 8171 0.71 0.555593
Target:  5'- gGCCGCGUccaucGCGUacucagugagcggcgUCGAGACGUUUUGa -3'
miRNA:   3'- aCGGCGCGu----CGCA---------------AGUUUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 42091 0.68 0.686206
Target:  5'- cGUCGUGCuGCGcgaCGAGGCGUgUCGc -3'
miRNA:   3'- aCGGCGCGuCGCaa-GUUUUGCAgAGC- -5'
17013 5' -52.6 NC_004333.2 + 2476 0.68 0.69737
Target:  5'- aGCCGCGU--UGUUCGAGACGa-UCGa -3'
miRNA:   3'- aCGGCGCGucGCAAGUUUUGCagAGC- -5'
17013 5' -52.6 NC_004333.2 + 30239 0.73 0.415452
Target:  5'- cGCCGCGCGcgaucaguGCGUUCAuGACGUacaggCGa -3'
miRNA:   3'- aCGGCGCGU--------CGCAAGUuUUGCAga---GC- -5'
17013 5' -52.6 NC_004333.2 + 30808 0.72 0.496828
Target:  5'- aUGuuGCGCAGguUGUUCGAGACGg-UCGa -3'
miRNA:   3'- -ACggCGCGUC--GCAAGUUUUGCagAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.