miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 5' -52.6 NC_004333.2 + 44895 0.68 0.731502
Target:  5'- cGCUGCGcCAGCugaugagcuGCGUCUCGa -3'
miRNA:   3'- aCGGCGC-GUCGcaaguuu--UGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 47189 0.68 0.69737
Target:  5'- cUGCCGCGCAGCa--CGAGGCacaaGUCgccgCGa -3'
miRNA:   3'- -ACGGCGCGUCGcaaGUUUUG----CAGa---GC- -5'
17013 5' -52.6 NC_004333.2 + 32539 0.7 0.607166
Target:  5'- cGUCGCGCGGCGcgCuc-GCGUCg-- -3'
miRNA:   3'- aCGGCGCGUCGCaaGuuuUGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 30239 0.73 0.415452
Target:  5'- cGCCGCGCGcgaucaguGCGUUCAuGACGUacaggCGa -3'
miRNA:   3'- aCGGCGCGU--------CGCAAGUuUUGCAga---GC- -5'
17013 5' -52.6 NC_004333.2 + 11665 0.66 0.803293
Target:  5'- aGUCGCGCAgGCGcUUCAuuuCGUCg-- -3'
miRNA:   3'- aCGGCGCGU-CGC-AAGUuuuGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 13545 0.67 0.772957
Target:  5'- uUGCCGC-CGGCGgcCAGgccgGAUGUgUCGg -3'
miRNA:   3'- -ACGGCGcGUCGCaaGUU----UUGCAgAGC- -5'
17013 5' -52.6 NC_004333.2 + 433 0.68 0.69737
Target:  5'- gGCUGCGCGGCaGUgCGGAACGcaaUCUUc -3'
miRNA:   3'- aCGGCGCGUCG-CAaGUUUUGC---AGAGc -5'
17013 5' -52.6 NC_004333.2 + 21791 0.76 0.270392
Target:  5'- gUGCCGCGCgaguggcagcugaaAGCGUUCGAGGCauucCUCGa -3'
miRNA:   3'- -ACGGCGCG--------------UCGCAAGUUUUGca--GAGC- -5'
17013 5' -52.6 NC_004333.2 + 3556 0.67 0.77192
Target:  5'- gUGCCGCGCAGC-------GCGUCggcCGa -3'
miRNA:   3'- -ACGGCGCGUCGcaaguuuUGCAGa--GC- -5'
17013 5' -52.6 NC_004333.2 + 37115 0.76 0.265472
Target:  5'- aGCUGCGgGGCGUgcUCGAAGCG-CUCa -3'
miRNA:   3'- aCGGCGCgUCGCA--AGUUUUGCaGAGc -5'
17013 5' -52.6 NC_004333.2 + 2476 0.68 0.69737
Target:  5'- aGCCGCGU--UGUUCGAGACGa-UCGa -3'
miRNA:   3'- aCGGCGCGucGCAAGUUUUGCagAGC- -5'
17013 5' -52.6 NC_004333.2 + 37320 0.67 0.741237
Target:  5'- gGUCGCgGCGGUGcUCGAcGCG-CUCGa -3'
miRNA:   3'- aCGGCG-CGUCGCaAGUUuUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 4256 0.69 0.674986
Target:  5'- aUGCCGCGCA-CGUUCGu-GCGcC-CGg -3'
miRNA:   3'- -ACGGCGCGUcGCAAGUuuUGCaGaGC- -5'
17013 5' -52.6 NC_004333.2 + 40955 0.69 0.663723
Target:  5'- gGUCGCaCGGCaggCGAAACGUUUCGg -3'
miRNA:   3'- aCGGCGcGUCGcaaGUUUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 13991 0.71 0.518299
Target:  5'- aGCUGCGC-GCGcUUCuuuGCGUUUCGa -3'
miRNA:   3'- aCGGCGCGuCGC-AAGuuuUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 2914 0.72 0.486243
Target:  5'- gUGCUGCGCAGCGgUCGuGAcCGUCa-- -3'
miRNA:   3'- -ACGGCGCGUCGCaAGUuUU-GCAGagc -5'
17013 5' -52.6 NC_004333.2 + 13471 0.66 0.813041
Target:  5'- cGUCGCGaaugcgcaGGCGUUCGAucuCGUCaUUGa -3'
miRNA:   3'- aCGGCGCg-------UCGCAAGUUuu-GCAG-AGC- -5'
17013 5' -52.6 NC_004333.2 + 35436 0.66 0.803293
Target:  5'- gGCgUGCGCAGUGUUUAGuGCGg-UCGu -3'
miRNA:   3'- aCG-GCGCGUCGCAAGUUuUGCagAGC- -5'
17013 5' -52.6 NC_004333.2 + 16817 0.66 0.793355
Target:  5'- cGCCGgGUgucgaAGCGUUCGuauCG-CUCGa -3'
miRNA:   3'- aCGGCgCG-----UCGCAAGUuuuGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 8677 0.67 0.772957
Target:  5'- gUGCCGU-CGGCGUUCAGcACGg--CGa -3'
miRNA:   3'- -ACGGCGcGUCGCAAGUUuUGCagaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.