miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17014 3' -58.2 NC_004333.2 + 39739 1.12 0.000276
Target:  5'- gUGGUGGCCGGGCAGAUCAACGUCGGCg -3'
miRNA:   3'- -ACCACCGGCCCGUCUAGUUGCAGCCG- -5'
17014 3' -58.2 NC_004333.2 + 33156 0.74 0.159087
Target:  5'- aGGUGGCgaguuuCGcGGC--GUCGGCGUCGGCg -3'
miRNA:   3'- aCCACCG------GC-CCGucUAGUUGCAGCCG- -5'
17014 3' -58.2 NC_004333.2 + 16851 0.74 0.172489
Target:  5'- aGcUGGCCGGcauuGCGGGcgccgugcUCGGCGUCGGCg -3'
miRNA:   3'- aCcACCGGCC----CGUCU--------AGUUGCAGCCG- -5'
17014 3' -58.2 NC_004333.2 + 2700 0.73 0.19707
Target:  5'- cGGcGGCCGacaGGCcGAUCu-CGUCGGCg -3'
miRNA:   3'- aCCaCCGGC---CCGuCUAGuuGCAGCCG- -5'
17014 3' -58.2 NC_004333.2 + 5036 0.72 0.228175
Target:  5'- aGGcGGCCaGGCGGccggcuguuggcCGACGUCGGCg -3'
miRNA:   3'- aCCaCCGGcCCGUCua----------GUUGCAGCCG- -5'
17014 3' -58.2 NC_004333.2 + 22182 0.72 0.230549
Target:  5'- cGGcGGCCGgcGGCGGuUCGGCGgcugCGGCc -3'
miRNA:   3'- aCCaCCGGC--CCGUCuAGUUGCa---GCCG- -5'
17014 3' -58.2 NC_004333.2 + 16575 0.71 0.262005
Target:  5'- ---cGGCCGagacGGCGcuuAUCAACGUCGGCa -3'
miRNA:   3'- accaCCGGC----CCGUc--UAGUUGCAGCCG- -5'
17014 3' -58.2 NC_004333.2 + 46182 0.7 0.311785
Target:  5'- gUGGgcgaccgagGGCUGGGCgcgucucgcgccGGAUCAGCGcCaGGCg -3'
miRNA:   3'- -ACCa--------CCGGCCCG------------UCUAGUUGCaG-CCG- -5'
17014 3' -58.2 NC_004333.2 + 19551 0.69 0.343314
Target:  5'- aUGG-GcGCCGGucGCAcGGUCGGCG-CGGCa -3'
miRNA:   3'- -ACCaC-CGGCC--CGU-CUAGUUGCaGCCG- -5'
17014 3' -58.2 NC_004333.2 + 9272 0.69 0.359919
Target:  5'- uUGuUGGCCGuGCcGAUCAGCGcgaagCGGCg -3'
miRNA:   3'- -ACcACCGGCcCGuCUAGUUGCa----GCCG- -5'
17014 3' -58.2 NC_004333.2 + 38654 0.69 0.368429
Target:  5'- gGGcGGCaCGGGCAaGUCGuacuuCGUCGaGCa -3'
miRNA:   3'- aCCaCCG-GCCCGUcUAGUu----GCAGC-CG- -5'
17014 3' -58.2 NC_004333.2 + 41715 0.69 0.368429
Target:  5'- gGGcGGCaCGGcGC-GAUCAACGaggagaUCGGCg -3'
miRNA:   3'- aCCaCCG-GCC-CGuCUAGUUGC------AGCCG- -5'
17014 3' -58.2 NC_004333.2 + 40330 0.69 0.377076
Target:  5'- cUGGaaaUGGCCGGcGCAGG-CcGCGUCgaucuGGCg -3'
miRNA:   3'- -ACC---ACCGGCC-CGUCUaGuUGCAG-----CCG- -5'
17014 3' -58.2 NC_004333.2 + 31515 0.68 0.394775
Target:  5'- cGGUGcagcaCCGGGCAGGUCGAagugcUGUC-GCa -3'
miRNA:   3'- aCCACc----GGCCCGUCUAGUU-----GCAGcCG- -5'
17014 3' -58.2 NC_004333.2 + 31277 0.68 0.403824
Target:  5'- gGGcGcCCGGGCaccAGAUCAGgcaGUCGGCc -3'
miRNA:   3'- aCCaCcGGCCCG---UCUAGUUg--CAGCCG- -5'
17014 3' -58.2 NC_004333.2 + 2972 0.68 0.403824
Target:  5'- -cGUGGCCGGGCu--UCGugGcgCGGa -3'
miRNA:   3'- acCACCGGCCCGucuAGUugCa-GCCg -5'
17014 3' -58.2 NC_004333.2 + 25996 0.68 0.403824
Target:  5'- gGGUucGGuUCGGGCAGGUUcAUGUCaGCa -3'
miRNA:   3'- aCCA--CC-GGCCCGUCUAGuUGCAGcCG- -5'
17014 3' -58.2 NC_004333.2 + 35792 0.68 0.422309
Target:  5'- cUGGcGcGCCGGGCGGggCGcggGCGggcgcuaCGGCg -3'
miRNA:   3'- -ACCaC-CGGCCCGUCuaGU---UGCa------GCCG- -5'
17014 3' -58.2 NC_004333.2 + 679 0.67 0.450966
Target:  5'- cUGGUcgcgccGGCCGGcGCcucguUCAGCG-CGGCa -3'
miRNA:   3'- -ACCA------CCGGCC-CGucu--AGUUGCaGCCG- -5'
17014 3' -58.2 NC_004333.2 + 1194 0.67 0.460753
Target:  5'- cUGGUGGaagaaagCGGGUucGAUUAuugcuuguCGUCGGCg -3'
miRNA:   3'- -ACCACCg------GCCCGu-CUAGUu-------GCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.