Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17014 | 3' | -58.2 | NC_004333.2 | + | 679 | 0.67 | 0.450966 |
Target: 5'- cUGGUcgcgccGGCCGGcGCcucguUCAGCG-CGGCa -3' miRNA: 3'- -ACCA------CCGGCC-CGucu--AGUUGCaGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 1194 | 0.67 | 0.460753 |
Target: 5'- cUGGUGGaagaaagCGGGUucGAUUAuugcuuguCGUCGGCg -3' miRNA: 3'- -ACCACCg------GCCCGu-CUAGUu-------GCAGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 2700 | 0.73 | 0.19707 |
Target: 5'- cGGcGGCCGacaGGCcGAUCu-CGUCGGCg -3' miRNA: 3'- aCCaCCGGC---CCGuCUAGuuGCAGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 2972 | 0.68 | 0.403824 |
Target: 5'- -cGUGGCCGGGCu--UCGugGcgCGGa -3' miRNA: 3'- acCACCGGCCCGucuAGUugCa-GCCg -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 3119 | 0.66 | 0.54266 |
Target: 5'- cGGgcgcGGCCGcGCGGuguUCAGCGUUuGCg -3' miRNA: 3'- aCCa---CCGGCcCGUCu--AGUUGCAGcCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 5036 | 0.72 | 0.228175 |
Target: 5'- aGGcGGCCaGGCGGccggcuguuggcCGACGUCGGCg -3' miRNA: 3'- aCCaCCGGcCCGUCua----------GUUGCAGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 5496 | 0.66 | 0.53212 |
Target: 5'- ---cGGCCGGcGUGGA--GACGaUCGGCg -3' miRNA: 3'- accaCCGGCC-CGUCUagUUGC-AGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 6356 | 0.66 | 0.500971 |
Target: 5'- ---cGGCCGGGCGccGUCGugcCGUCGGg -3' miRNA: 3'- accaCCGGCCCGUc-UAGUu--GCAGCCg -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 7006 | 0.67 | 0.470652 |
Target: 5'- aGuUGGCCGGuGCAGAUucaucaaaCGGCGaaUCGGUc -3' miRNA: 3'- aCcACCGGCC-CGUCUA--------GUUGC--AGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 9272 | 0.69 | 0.359919 |
Target: 5'- uUGuUGGCCGuGCcGAUCAGCGcgaagCGGCg -3' miRNA: 3'- -ACcACCGGCcCGuCUAGUUGCa----GCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 10034 | 0.66 | 0.54266 |
Target: 5'- cGGcGGCCGGGU----CGGCGUCGaacGCg -3' miRNA: 3'- aCCaCCGGCCCGucuaGUUGCAGC---CG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 16575 | 0.71 | 0.262005 |
Target: 5'- ---cGGCCGagacGGCGcuuAUCAACGUCGGCa -3' miRNA: 3'- accaCCGGC----CCGUc--UAGUUGCAGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 16851 | 0.74 | 0.172489 |
Target: 5'- aGcUGGCCGGcauuGCGGGcgccgugcUCGGCGUCGGCg -3' miRNA: 3'- aCcACCGGCC----CGUCU--------AGUUGCAGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 19551 | 0.69 | 0.343314 |
Target: 5'- aUGG-GcGCCGGucGCAcGGUCGGCG-CGGCa -3' miRNA: 3'- -ACCaC-CGGCC--CGU-CUAGUUGCaGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 21371 | 0.66 | 0.546895 |
Target: 5'- ---aGGCCGGGCcGucggCAACGaagcgcgccuacucgUCGGCa -3' miRNA: 3'- accaCCGGCCCGuCua--GUUGC---------------AGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 22182 | 0.72 | 0.230549 |
Target: 5'- cGGcGGCCGgcGGCGGuUCGGCGgcugCGGCc -3' miRNA: 3'- aCCaCCGGC--CCGUCuAGUUGCa---GCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 22731 | 0.66 | 0.511269 |
Target: 5'- aUGGUGaaGCCGcuCGGGUCGACGaaccaCGGCg -3' miRNA: 3'- -ACCAC--CGGCccGUCUAGUUGCa----GCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 25996 | 0.68 | 0.403824 |
Target: 5'- gGGUucGGuUCGGGCAGGUUcAUGUCaGCa -3' miRNA: 3'- aCCA--CC-GGCCCGUCUAGuUGCAGcCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 29918 | 0.66 | 0.511269 |
Target: 5'- aGGUGuGCaGGGUucugcGGAUUAGCagcgugccGUCGGCg -3' miRNA: 3'- aCCAC-CGgCCCG-----UCUAGUUG--------CAGCCG- -5' |
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17014 | 3' | -58.2 | NC_004333.2 | + | 31231 | 0.66 | 0.54266 |
Target: 5'- cGGUcgcgacGGCCGcGCGGcgCAGCGccgucUCGGUg -3' miRNA: 3'- aCCA------CCGGCcCGUCuaGUUGC-----AGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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