Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17016 | 5' | -51.4 | NC_004333.2 | + | 36270 | 0.66 | 0.859474 |
Target: 5'- cGCcGCUGCGcAUGCCgg-GCCGcGACGAc -3' miRNA: 3'- -CGuCGGCGC-UAUGGaauUGGU-CUGUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 20446 | 0.66 | 0.859474 |
Target: 5'- gGCGG-CGCGAaGCCUgcGCCGGuCGu -3' miRNA: 3'- -CGUCgGCGCUaUGGAauUGGUCuGUu -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 31316 | 0.66 | 0.850661 |
Target: 5'- aCAGUCGCccgucGAUcGCCUUGGCCGcGACGc -3' miRNA: 3'- cGUCGGCG-----CUA-UGGAAUUGGU-CUGUu -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 42291 | 0.66 | 0.841594 |
Target: 5'- cCGGCCGCaaGGUGCC--GACCgAGGCGu -3' miRNA: 3'- cGUCGGCG--CUAUGGaaUUGG-UCUGUu -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 6586 | 0.66 | 0.841594 |
Target: 5'- -gGGCCGCaGUGCa---ACCAGGCAGu -3' miRNA: 3'- cgUCGGCGcUAUGgaauUGGUCUGUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 16308 | 0.66 | 0.822739 |
Target: 5'- gGCuuGCCGCGAUucaGCag-AugCAGGCAAa -3' miRNA: 3'- -CGu-CGGCGCUA---UGgaaUugGUCUGUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 22976 | 0.67 | 0.812973 |
Target: 5'- gGCAGCguCGCGGUACCggucGCCgAGAgCAGg -3' miRNA: 3'- -CGUCG--GCGCUAUGGaau-UGG-UCU-GUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 24813 | 0.67 | 0.812973 |
Target: 5'- gGCAGCUGCGcgACCUgcacguugAAgUAGACc- -3' miRNA: 3'- -CGUCGGCGCuaUGGAa-------UUgGUCUGuu -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 40235 | 0.67 | 0.802998 |
Target: 5'- cGCGGCCGgccaacCGAUcgacgaauucgaACCUuucUGACUAGGCAAa -3' miRNA: 3'- -CGUCGGC------GCUA------------UGGA---AUUGGUCUGUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 31492 | 0.67 | 0.796916 |
Target: 5'- uGCAGCggugcuuccgcaccgCGCGGUGCagc-ACCGGGCAGg -3' miRNA: 3'- -CGUCG---------------GCGCUAUGgaauUGGUCUGUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 22201 | 0.67 | 0.792823 |
Target: 5'- gGCGGCUGCG--GCCUgcucgauGCCgAGACGGg -3' miRNA: 3'- -CGUCGGCGCuaUGGAau-----UGG-UCUGUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 29973 | 0.68 | 0.728335 |
Target: 5'- cGCGGCCGCGcUGCC---ACCGG-CGc -3' miRNA: 3'- -CGUCGGCGCuAUGGaauUGGUCuGUu -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 8886 | 0.68 | 0.717137 |
Target: 5'- uUAGCCGCGc-ACCUUGAUCuuGGCGAg -3' miRNA: 3'- cGUCGGCGCuaUGGAAUUGGu-CUGUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 6324 | 0.69 | 0.683036 |
Target: 5'- cGCAGCCGUGAggacgACCgc-ACCGcGCGAu -3' miRNA: 3'- -CGUCGGCGCUa----UGGaauUGGUcUGUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 33436 | 0.69 | 0.683036 |
Target: 5'- cGUAGCCGCGAguccgGCagcaUUGgcagcggcgcGCCGGGCGAu -3' miRNA: 3'- -CGUCGGCGCUa----UGg---AAU----------UGGUCUGUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 45766 | 0.69 | 0.671544 |
Target: 5'- cGCuGCCGCuGUACggcGACCAGGCGAc -3' miRNA: 3'- -CGuCGGCGcUAUGgaaUUGGUCUGUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 17625 | 0.69 | 0.660011 |
Target: 5'- cCGGCCGCGcccgGUGCCgUGGCC-GACAc -3' miRNA: 3'- cGUCGGCGC----UAUGGaAUUGGuCUGUu -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 2884 | 0.7 | 0.64845 |
Target: 5'- cGCAGCgGCGAggcugAUgUUGGCCgAGACGu -3' miRNA: 3'- -CGUCGgCGCUa----UGgAAUUGG-UCUGUu -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 408 | 0.7 | 0.602153 |
Target: 5'- -gAGCgCGCGAU-CCUUGAUCaAGACAGg -3' miRNA: 3'- cgUCG-GCGCUAuGGAAUUGG-UCUGUU- -5' |
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17016 | 5' | -51.4 | NC_004333.2 | + | 45434 | 0.71 | 0.590623 |
Target: 5'- gGCGGCCGCGAUcucgGCUgUGACgGGcACGAa -3' miRNA: 3'- -CGUCGGCGCUA----UGGaAUUGgUC-UGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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