miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17020 3' -54.9 NC_004333.2 + 26009 0.69 0.495083
Target:  5'- cCGGCCG-CcGCCgGCGaCAAGGAGa-- -3'
miRNA:   3'- -GCCGGCuGuUGGgCGC-GUUUCUCaug -5'
17020 3' -54.9 NC_004333.2 + 38715 0.68 0.592512
Target:  5'- gCGGUgCGGC-ACCCGCGCcu--GGUGCg -3'
miRNA:   3'- -GCCG-GCUGuUGGGCGCGuuucUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 19405 0.68 0.592512
Target:  5'- uCGcGCCGccGCGACCCGCGCGGucGAcgcgGCg -3'
miRNA:   3'- -GC-CGGC--UGUUGGGCGCGUUu-CUca--UG- -5'
17020 3' -54.9 NC_004333.2 + 8970 0.68 0.592512
Target:  5'- uCGGCCGACGggagcgcgGgCCGUGCugccGGUGCa -3'
miRNA:   3'- -GCCGGCUGU--------UgGGCGCGuuucUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 7955 0.68 0.592512
Target:  5'- uGGCCGGCcGCgUCGCGCAcuucGUACa -3'
miRNA:   3'- gCCGGCUGuUG-GGCGCGUuucuCAUG- -5'
17020 3' -54.9 NC_004333.2 + 9276 0.68 0.580335
Target:  5'- uGGCCGugcCGAUCaGCGCGAAGcggcgcgGGUGCg -3'
miRNA:   3'- gCCGGCu--GUUGGgCGCGUUUC-------UCAUG- -5'
17020 3' -54.9 NC_004333.2 + 3042 0.68 0.552875
Target:  5'- uCGGgCGACGACagguaggcgcgaucgCCGCGCAGAcaggcgucGAGUAUc -3'
miRNA:   3'- -GCCgGCUGUUG---------------GGCGCGUUU--------CUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 224 0.69 0.526891
Target:  5'- -cGCCGACGACCaGCGCGccGAGc-- -3'
miRNA:   3'- gcCGGCUGUUGGgCGCGUuuCUCaug -5'
17020 3' -54.9 NC_004333.2 + 24756 0.69 0.516198
Target:  5'- cCGGCCGGCGGCggguaCGUGCcGGGcuaccAGUACg -3'
miRNA:   3'- -GCCGGCUGUUGg----GCGCGuUUC-----UCAUG- -5'
17020 3' -54.9 NC_004333.2 + 41346 0.68 0.592512
Target:  5'- -aGCCGACGaguGCCC-CGCc-GGAGUGCc -3'
miRNA:   3'- gcCGGCUGU---UGGGcGCGuuUCUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 37304 0.68 0.596951
Target:  5'- uCGcGCCGGCGuucuuCCCGCGCGGcgucaagcgcgugacAGcGUACu -3'
miRNA:   3'- -GC-CGGCUGUu----GGGCGCGUU---------------UCuCAUG- -5'
17020 3' -54.9 NC_004333.2 + 28207 0.67 0.603618
Target:  5'- aGGCCGACAGCgCGCagucggGCAAAGcacucgACg -3'
miRNA:   3'- gCCGGCUGUUGgGCG------CGUUUCuca---UG- -5'
17020 3' -54.9 NC_004333.2 + 27859 0.66 0.681509
Target:  5'- aCGGCCGGCAagccuggcaACCaCGuCGCGgcGAGg-- -3'
miRNA:   3'- -GCCGGCUGU---------UGG-GC-GCGUuuCUCaug -5'
17020 3' -54.9 NC_004333.2 + 18807 0.66 0.681509
Target:  5'- gCGGgCGACGAgCCGCuuGAAGugcgcGUGCg -3'
miRNA:   3'- -GCCgGCUGUUgGGCGcgUUUCu----CAUG- -5'
17020 3' -54.9 NC_004333.2 + 16854 0.66 0.681509
Target:  5'- uGGCCGGCAuugcggGCgCCGUGCucGGcgucggcgcaGGUGCg -3'
miRNA:   3'- gCCGGCUGU------UG-GGCGCGuuUC----------UCAUG- -5'
17020 3' -54.9 NC_004333.2 + 7883 0.66 0.670439
Target:  5'- gGGCguacauCGACAAaCCGCGCAugcGGUACg -3'
miRNA:   3'- gCCG------GCUGUUgGGCGCGUuucUCAUG- -5'
17020 3' -54.9 NC_004333.2 + 36317 0.67 0.652654
Target:  5'- uCGGCCGACcggcagacggaagcgAuguACCgGCGCAAgcuGGAGcGCg -3'
miRNA:   3'- -GCCGGCUG---------------U---UGGgCGCGUU---UCUCaUG- -5'
17020 3' -54.9 NC_004333.2 + 2176 0.67 0.648198
Target:  5'- aGGCCGugcCAGCCCucgGCGCc--GAGUGg -3'
miRNA:   3'- gCCGGCu--GUUGGG---CGCGuuuCUCAUg -5'
17020 3' -54.9 NC_004333.2 + 14100 0.67 0.64151
Target:  5'- aGGauuCGACAAUCUGCGCGgcugcggcgaacacgGGGAGUGg -3'
miRNA:   3'- gCCg--GCUGUUGGGCGCGU---------------UUCUCAUg -5'
17020 3' -54.9 NC_004333.2 + 5189 0.67 0.622552
Target:  5'- uCGGUCGAgAGCgCCGCccgcucguccgccgGCGAGG-GUGCg -3'
miRNA:   3'- -GCCGGCUgUUG-GGCG--------------CGUUUCuCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.