Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17022 | 5' | -50.5 | NC_004333.2 | + | 40601 | 0.66 | 0.915279 |
Target: 5'- aCGuccUGCgcauGGGUCuGCCGccgACCGCCa -3' miRNA: 3'- -GCuauACG----UCCAG-CGGUaaaUGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 31222 | 0.66 | 0.894414 |
Target: 5'- uGGUcAUGCcGGUCGCgAcg-GCCGCg -3' miRNA: 3'- gCUA-UACGuCCAGCGgUaaaUGGCGg -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 9470 | 0.66 | 0.915279 |
Target: 5'- -----cGCGGGU-GCCGcaccGCCGCCg -3' miRNA: 3'- gcuauaCGUCCAgCGGUaaa-UGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 33897 | 0.66 | 0.921642 |
Target: 5'- aGcgGUGC-GGUUGCCGUguccaaucgAUUGCCg -3' miRNA: 3'- gCuaUACGuCCAGCGGUAaa-------UGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 18849 | 0.66 | 0.894414 |
Target: 5'- -aGUAcGCA-GUUGCCGUgcgcaacgcaUUGCCGCCg -3' miRNA: 3'- gcUAUaCGUcCAGCGGUA----------AAUGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 35301 | 0.66 | 0.908618 |
Target: 5'- aGGaAUGguGGcCGCCGccgUUACUGCa -3' miRNA: 3'- gCUaUACguCCaGCGGUa--AAUGGCGg -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 1890 | 0.66 | 0.915279 |
Target: 5'- gGAUugGCgGGGUCGCCGaucaggaagUACCaGCCa -3' miRNA: 3'- gCUAuaCG-UCCAGCGGUaa-------AUGG-CGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 16033 | 0.66 | 0.921642 |
Target: 5'- uCGGU-UGCAGGUCuGCCAUgca-UGCg -3' miRNA: 3'- -GCUAuACGUCCAG-CGGUAaaugGCGg -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 28737 | 0.66 | 0.921642 |
Target: 5'- -----cGCAGGUCGgCCAgcaACUGCg -3' miRNA: 3'- gcuauaCGUCCAGC-GGUaaaUGGCGg -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 1213 | 0.66 | 0.901662 |
Target: 5'- uCGAUuauUGCuuGUCGUCGgcgcgcGCCGCCu -3' miRNA: 3'- -GCUAu--ACGucCAGCGGUaaa---UGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 39487 | 0.66 | 0.908618 |
Target: 5'- aCGGUcgGCAcGuUCGCCGUgcugaaCGCCg -3' miRNA: 3'- -GCUAuaCGUcC-AGCGGUAaaug--GCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 12046 | 0.66 | 0.901662 |
Target: 5'- aGGU-UGCGccGGUCGCgCAg--GCCGUCg -3' miRNA: 3'- gCUAuACGU--CCAGCG-GUaaaUGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 2749 | 0.66 | 0.915279 |
Target: 5'- gCGA-AUGCGccGUCGCC----GCCGCCg -3' miRNA: 3'- -GCUaUACGUc-CAGCGGuaaaUGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 35882 | 0.67 | 0.870969 |
Target: 5'- -----cGCAGGaCGCCGcaaugcgcGCCGCCg -3' miRNA: 3'- gcuauaCGUCCaGCGGUaaa-----UGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 29918 | 0.67 | 0.882222 |
Target: 5'- aGGUGUGCAGGguucugcggauuaGCagcgUGCCGUCg -3' miRNA: 3'- gCUAUACGUCCag-----------CGguaaAUGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 8393 | 0.68 | 0.830418 |
Target: 5'- uGAggAUGUAGcccgugucgagcaacGUCGCCGauacggUGCCGCCg -3' miRNA: 3'- gCUa-UACGUC---------------CAGCGGUaa----AUGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 8677 | 0.68 | 0.817082 |
Target: 5'- cCGAUcgGCGuGUCGUCcgUUAC-GCCg -3' miRNA: 3'- -GCUAuaCGUcCAGCGGuaAAUGgCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 44255 | 0.68 | 0.807303 |
Target: 5'- cCGGUcgGCcuGcCGCCGc-UGCCGCCu -3' miRNA: 3'- -GCUAuaCGucCaGCGGUaaAUGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 260 | 0.68 | 0.835999 |
Target: 5'- uCGAUGU---GGUCGUCAc--GCCGCCg -3' miRNA: 3'- -GCUAUAcguCCAGCGGUaaaUGGCGG- -5' |
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17022 | 5' | -50.5 | NC_004333.2 | + | 25725 | 0.69 | 0.766316 |
Target: 5'- aCGAgccucggGCAGGUCGCCA----UCGCg -3' miRNA: 3'- -GCUaua----CGUCCAGCGGUaaauGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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