miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17022 5' -50.5 NC_004333.2 + 73 0.69 0.755664
Target:  5'- gCGcgGUGCGcG-CGCCcggUUGCCGCCu -3'
miRNA:   3'- -GCuaUACGUcCaGCGGua-AAUGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 260 0.68 0.835999
Target:  5'- uCGAUGU---GGUCGUCAc--GCCGCCg -3'
miRNA:   3'- -GCUAUAcguCCAGCGGUaaaUGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 1213 0.66 0.901662
Target:  5'- uCGAUuauUGCuuGUCGUCGgcgcgcGCCGCCu -3'
miRNA:   3'- -GCUAu--ACGucCAGCGGUaaa---UGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 1890 0.66 0.915279
Target:  5'- gGAUugGCgGGGUCGCCGaucaggaagUACCaGCCa -3'
miRNA:   3'- gCUAuaCG-UCCAGCGGUaa-------AUGG-CGG- -5'
17022 5' -50.5 NC_004333.2 + 1912 0.71 0.689336
Target:  5'- uCGGUGUaaucgGGGUCGCCGUUcagaaUGCgCGCCa -3'
miRNA:   3'- -GCUAUAcg---UCCAGCGGUAA-----AUG-GCGG- -5'
17022 5' -50.5 NC_004333.2 + 2659 0.7 0.733963
Target:  5'- uCGA-AUGCGGGgCGCCccgc-CCGCCa -3'
miRNA:   3'- -GCUaUACGUCCaGCGGuaaauGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 2710 0.76 0.405619
Target:  5'- uCGGgcgGCAGGUggaCGCCGUaguugGCCGCCa -3'
miRNA:   3'- -GCUauaCGUCCA---GCGGUAaa---UGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 2749 0.66 0.915279
Target:  5'- gCGA-AUGCGccGUCGCC----GCCGCCg -3'
miRNA:   3'- -GCUaUACGUc-CAGCGGuaaaUGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 7400 0.72 0.586587
Target:  5'- -----cGCAGGUCGCCGUgu-CCuuGCCu -3'
miRNA:   3'- gcuauaCGUCCAGCGGUAaauGG--CGG- -5'
17022 5' -50.5 NC_004333.2 + 8393 0.68 0.830418
Target:  5'- uGAggAUGUAGcccgugucgagcaacGUCGCCGauacggUGCCGCCg -3'
miRNA:   3'- gCUa-UACGUC---------------CAGCGGUaa----AUGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 8677 0.68 0.817082
Target:  5'- cCGAUcgGCGuGUCGUCcgUUAC-GCCg -3'
miRNA:   3'- -GCUAuaCGUcCAGCGGuaAAUGgCGG- -5'
17022 5' -50.5 NC_004333.2 + 9470 0.66 0.915279
Target:  5'- -----cGCGGGU-GCCGcaccGCCGCCg -3'
miRNA:   3'- gcuauaCGUCCAgCGGUaaa-UGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 9930 0.79 0.271006
Target:  5'- aCGA---GCAGGUCGCCGcgcaggugUUUGCCGUCg -3'
miRNA:   3'- -GCUauaCGUCCAGCGGU--------AAAUGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 12046 0.66 0.901662
Target:  5'- aGGU-UGCGccGGUCGCgCAg--GCCGUCg -3'
miRNA:   3'- gCUAuACGU--CCAGCG-GUaaaUGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 13504 0.69 0.791247
Target:  5'- uGAUcUGCuucagcuGGUCGCCguccgacgugcucgcGgcgUUGCCGCCg -3'
miRNA:   3'- gCUAuACGu------CCAGCGG---------------Ua--AAUGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 14383 0.7 0.72294
Target:  5'- aGGUcgGCAauugccugcgcGGUCGCCAUgaaggcgaguUUcucgcGCCGCCa -3'
miRNA:   3'- gCUAuaCGU-----------CCAGCGGUA----------AA-----UGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 16033 0.66 0.921642
Target:  5'- uCGGU-UGCAGGUCuGCCAUgca-UGCg -3'
miRNA:   3'- -GCUAuACGUCCAG-CGGUAaaugGCGg -5'
17022 5' -50.5 NC_004333.2 + 18849 0.66 0.894414
Target:  5'- -aGUAcGCA-GUUGCCGUgcgcaacgcaUUGCCGCCg -3'
miRNA:   3'- gcUAUaCGUcCAGCGGUA----------AAUGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 23368 0.76 0.396062
Target:  5'- ---cGUGCAGGUCGCgCA---GCUGCCg -3'
miRNA:   3'- gcuaUACGUCCAGCG-GUaaaUGGCGG- -5'
17022 5' -50.5 NC_004333.2 + 25725 0.69 0.766316
Target:  5'- aCGAgccucggGCAGGUCGCCA----UCGCg -3'
miRNA:   3'- -GCUaua----CGUCCAGCGGUaaauGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.