miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17023 5' -52.9 NC_004333.2 + 26973 0.69 0.666633
Target:  5'- aCGG-CGUCAuUCGUGuccguuucuUCGAGCAGCGg -3'
miRNA:   3'- -GCUgGCAGUuAGCGC---------AGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 11697 0.69 0.655499
Target:  5'- --uCCGUCGAcgcaGCGcCGGGCGGCGUg -3'
miRNA:   3'- gcuGGCAGUUag--CGCaGCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 6355 0.69 0.655499
Target:  5'- gCGGCCGggcgCcGUCGUgccGUCGGGCAGCu- -3'
miRNA:   3'- -GCUGGCa---GuUAGCG---CAGCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 11098 0.69 0.655499
Target:  5'- uGAUCGUg---CGCGaCGAACAGCGg -3'
miRNA:   3'- gCUGGCAguuaGCGCaGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 29763 0.69 0.633177
Target:  5'- -cGCCGcCGAUCGCGaggcguugcgcuUCGGACGGCa- -3'
miRNA:   3'- gcUGGCaGUUAGCGC------------AGCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 30668 0.69 0.633177
Target:  5'- gCGACCGgcugcagCAGgucggUGCGgucgagugCGAGCAGCGUg -3'
miRNA:   3'- -GCUGGCa------GUUa----GCGCa-------GCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 15520 0.69 0.63206
Target:  5'- gCGGCgCGUCAAgCGCGauguuagcgggcaUCGAGCAGCc- -3'
miRNA:   3'- -GCUG-GCAGUUaGCGC-------------AGCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 10036 0.7 0.622009
Target:  5'- gCGGCCGg--GUCgGCGUCGAAC-GCGa -3'
miRNA:   3'- -GCUGGCaguUAG-CGCAGCUUGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 5089 0.7 0.59971
Target:  5'- cCGAuacUCGUUGAUCGCGucUCGAuguGCGGCGUc -3'
miRNA:   3'- -GCU---GGCAGUUAGCGC--AGCU---UGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 39443 0.7 0.58195
Target:  5'- -aGCUGUCGuccaacggcaagaugAUCGCGgacUCGAGCGGCGUc -3'
miRNA:   3'- gcUGGCAGU---------------UAGCGC---AGCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 16549 0.7 0.577525
Target:  5'- cCGACUGuUCAcgCGCG-CGGccACAGCGg -3'
miRNA:   3'- -GCUGGC-AGUuaGCGCaGCU--UGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 30893 0.71 0.566498
Target:  5'- uCGACUgGUUGAaCGCGUCGAGC-GCGUc -3'
miRNA:   3'- -GCUGG-CAGUUaGCGCAGCUUGuCGCA- -5'
17023 5' -52.9 NC_004333.2 + 30645 0.71 0.544616
Target:  5'- uGugCG-CGAUCGCuUCGGACAGUGc -3'
miRNA:   3'- gCugGCaGUUAGCGcAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 30762 0.71 0.523015
Target:  5'- uGAUCGUCAG-CGCGUCGuGACcGCGc -3'
miRNA:   3'- gCUGGCAGUUaGCGCAGC-UUGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 1614 0.72 0.512338
Target:  5'- uCGACCGcauccgggUCGAaUGCGUCGucgGCGGCGUa -3'
miRNA:   3'- -GCUGGC--------AGUUaGCGCAGCu--UGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 28085 0.72 0.512338
Target:  5'- gCGAUCugGUUcAUCGUGUCGAGCGGCa- -3'
miRNA:   3'- -GCUGG--CAGuUAGCGCAGCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 24427 0.72 0.491263
Target:  5'- aCGACuCGUCg--CGCGUCGAGCuGCc- -3'
miRNA:   3'- -GCUG-GCAGuuaGCGCAGCUUGuCGca -5'
17023 5' -52.9 NC_004333.2 + 3679 0.72 0.480877
Target:  5'- gCGACgGUCugagccGUCGCGUCGuAGCuGCGg -3'
miRNA:   3'- -GCUGgCAGu-----UAGCGCAGC-UUGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 11619 0.72 0.460433
Target:  5'- cCGGCCGUCAcuUCGCGcgCGAAC-GUGUc -3'
miRNA:   3'- -GCUGGCAGUu-AGCGCa-GCUUGuCGCA- -5'
17023 5' -52.9 NC_004333.2 + 7018 0.72 0.460433
Target:  5'- aGAUCGUaCAccuUCGCGUCGAACAgaccgcacuGCGUg -3'
miRNA:   3'- gCUGGCA-GUu--AGCGCAGCUUGU---------CGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.