miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17023 5' -52.9 NC_004333.2 + 33380 0.68 0.688788
Target:  5'- -uGCUGccCGAUCGCGUaGAACGGCGa -3'
miRNA:   3'- gcUGGCa-GUUAGCGCAgCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 1614 0.72 0.512338
Target:  5'- uCGACCGcauccgggUCGAaUGCGUCGucgGCGGCGUa -3'
miRNA:   3'- -GCUGGC--------AGUUaGCGCAGCu--UGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 38304 0.66 0.804093
Target:  5'- gCGACCGUgCA--CGCGgCGAcCGGCGa -3'
miRNA:   3'- -GCUGGCA-GUuaGCGCaGCUuGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 16819 0.68 0.732332
Target:  5'- cCGGgUGUCGAagcguucguaUCGC-UCGAGCAGCGc -3'
miRNA:   3'- -GCUgGCAGUU----------AGCGcAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 28085 0.72 0.512338
Target:  5'- gCGAUCugGUUcAUCGUGUCGAGCGGCa- -3'
miRNA:   3'- -GCUGG--CAGuUAGCGCAGCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 30833 0.67 0.784345
Target:  5'- uCGACaccgCGUCGuagaaCGCGUCGAGCgccuGGCGg -3'
miRNA:   3'- -GCUG----GCAGUua---GCGCAGCUUG----UCGCa -5'
17023 5' -52.9 NC_004333.2 + 3679 0.72 0.480877
Target:  5'- gCGACgGUCugagccGUCGCGUCGuAGCuGCGg -3'
miRNA:   3'- -GCUGgCAGu-----UAGCGCAGC-UUGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 11619 0.72 0.460433
Target:  5'- cCGGCCGUCAcuUCGCGcgCGAAC-GUGUc -3'
miRNA:   3'- -GCUGGCAGUu-AGCGCa-GCUUGuCGCA- -5'
17023 5' -52.9 NC_004333.2 + 35478 0.68 0.74299
Target:  5'- -cACCGUCAA-CGgGcCGGugAGCGUg -3'
miRNA:   3'- gcUGGCAGUUaGCgCaGCUugUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 5135 0.66 0.832297
Target:  5'- uCGuCCGUCAcgggCGagccgcccguguUGUCGAGCAGCGc -3'
miRNA:   3'- -GCuGGCAGUua--GC------------GCAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 11697 0.69 0.655499
Target:  5'- --uCCGUCGAcgcaGCGcCGGGCGGCGUg -3'
miRNA:   3'- gcuGGCAGUUag--CGCaGCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 30893 0.71 0.566498
Target:  5'- uCGACUgGUUGAaCGCGUCGAGC-GCGUc -3'
miRNA:   3'- -GCUGG-CAGUUaGCGCAGCUUGuCGCA- -5'
17023 5' -52.9 NC_004333.2 + 27119 0.67 0.753531
Target:  5'- gCGACCcUCGuggaacugCGCuUCGAACGGCGa -3'
miRNA:   3'- -GCUGGcAGUua------GCGcAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 17371 0.66 0.804093
Target:  5'- -cGCUGUgGGagGaCGUCGAGCAGCGc -3'
miRNA:   3'- gcUGGCAgUUagC-GCAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 16460 0.68 0.74299
Target:  5'- aCGuuCGUCGAgauuccgcagaUCGCGUCGAGCGuCGa -3'
miRNA:   3'- -GCugGCAGUU-----------AGCGCAGCUUGUcGCa -5'
17023 5' -52.9 NC_004333.2 + 22854 0.68 0.74299
Target:  5'- gCGACCGUUAcguacGUCGCGgcagUCGc-CGGCGUc -3'
miRNA:   3'- -GCUGGCAGU-----UAGCGC----AGCuuGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 7018 0.72 0.460433
Target:  5'- aGAUCGUaCAccuUCGCGUCGAACAgaccgcacuGCGUg -3'
miRNA:   3'- gCUGGCA-GUu--AGCGCAGCUUGU---------CGCA- -5'
17023 5' -52.9 NC_004333.2 + 2974 0.66 0.813694
Target:  5'- uGGCCGggcuUCGUGgcgCGGACAGCu- -3'
miRNA:   3'- gCUGGCaguuAGCGCa--GCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 30762 0.71 0.523015
Target:  5'- uGAUCGUCAG-CGCGUCGuGACcGCGc -3'
miRNA:   3'- gCUGGCAGUUaGCGCAGC-UUGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 24427 0.72 0.491263
Target:  5'- aCGACuCGUCg--CGCGUCGAGCuGCc- -3'
miRNA:   3'- -GCUG-GCAGuuaGCGCAGCUUGuCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.