miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17023 5' -52.9 NC_004333.2 + 12668 0.74 0.392776
Target:  5'- uCGACgGgUCGAcCGCGcCGAACAGCGa -3'
miRNA:   3'- -GCUGgC-AGUUaGCGCaGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 37386 0.68 0.718325
Target:  5'- gCGGCCGUCcucAUCGUccuacGUCGGcgcucgcgguuugcGCGGCGUg -3'
miRNA:   3'- -GCUGGCAGu--UAGCG-----CAGCU--------------UGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 16819 0.68 0.732332
Target:  5'- cCGGgUGUCGAagcguucguaUCGC-UCGAGCAGCGc -3'
miRNA:   3'- -GCUgGCAGUU----------AGCGcAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 45017 0.66 0.841279
Target:  5'- cCGGCCGcUCGAccgCGCGUgGcgcuGGCGGCGc -3'
miRNA:   3'- -GCUGGC-AGUUa--GCGCAgC----UUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 11619 0.72 0.460433
Target:  5'- cCGGCCGUCAcuUCGCGcgCGAAC-GUGUc -3'
miRNA:   3'- -GCUGGCAGUu-AGCGCa-GCUUGuCGCA- -5'
17023 5' -52.9 NC_004333.2 + 3679 0.72 0.480877
Target:  5'- gCGACgGUCugagccGUCGCGUCGuAGCuGCGg -3'
miRNA:   3'- -GCUGgCAGu-----UAGCGCAGC-UUGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 1614 0.72 0.512338
Target:  5'- uCGACCGcauccgggUCGAaUGCGUCGucgGCGGCGUa -3'
miRNA:   3'- -GCUGGC--------AGUUaGCGCAGCu--UGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 30893 0.71 0.566498
Target:  5'- uCGACUgGUUGAaCGCGUCGAGC-GCGUc -3'
miRNA:   3'- -GCUGG-CAGUUaGCGCAGCUUGuCGCA- -5'
17023 5' -52.9 NC_004333.2 + 11697 0.69 0.655499
Target:  5'- --uCCGUCGAcgcaGCGcCGGGCGGCGUg -3'
miRNA:   3'- gcuGGCAGUUag--CGCaGCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 28016 0.68 0.71507
Target:  5'- uGGCCGUUccagacgucgauacuGAUCGUGUCGcucgugauCGGCGUa -3'
miRNA:   3'- gCUGGCAG---------------UUAGCGCAGCuu------GUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 45857 0.69 0.677733
Target:  5'- uCGA-UGUCGAUCGUGUCGAAgAGauaGUg -3'
miRNA:   3'- -GCUgGCAGUUAGCGCAGCUUgUCg--CA- -5'
17023 5' -52.9 NC_004333.2 + 11098 0.69 0.655499
Target:  5'- uGAUCGUg---CGCGaCGAACAGCGg -3'
miRNA:   3'- gCUGGCAguuaGCGCaGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 21520 0.73 0.411447
Target:  5'- -cACUGUCGAcgggCGCGUCGAAC-GCGUa -3'
miRNA:   3'- gcUGGCAGUUa---GCGCAGCUUGuCGCA- -5'
17023 5' -52.9 NC_004333.2 + 33380 0.68 0.688788
Target:  5'- -uGCUGccCGAUCGCGUaGAACGGCGa -3'
miRNA:   3'- gcUGGCa-GUUAGCGCAgCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 20565 0.73 0.430658
Target:  5'- uGAUCGUCGG-CGCGUCGggUcGCGc -3'
miRNA:   3'- gCUGGCAGUUaGCGCAGCuuGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 15520 0.69 0.63206
Target:  5'- gCGGCgCGUCAAgCGCGauguuagcgggcaUCGAGCAGCc- -3'
miRNA:   3'- -GCUG-GCAGUUaGCGC-------------AGCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 5058 0.68 0.710719
Target:  5'- uGGCCGacgUCGG-CGCGgcgcUGAACAGCGUc -3'
miRNA:   3'- gCUGGC---AGUUaGCGCa---GCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 21989 0.68 0.732332
Target:  5'- gGGCCGUUuucuUUGCGUCGGcgcgaauCAGCGc -3'
miRNA:   3'- gCUGGCAGuu--AGCGCAGCUu------GUCGCa -5'
17023 5' -52.9 NC_004333.2 + 8169 0.73 0.450385
Target:  5'- uCGGCCGcgUCcAUCGCGUacucagUGAGCGGCGUc -3'
miRNA:   3'- -GCUGGC--AGuUAGCGCA------GCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 28085 0.72 0.512338
Target:  5'- gCGAUCugGUUcAUCGUGUCGAGCGGCa- -3'
miRNA:   3'- -GCUGG--CAGuUAGCGCAGCUUGUCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.