miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17023 5' -52.9 NC_004333.2 + 37467 1.08 0.002109
Target:  5'- aCGACCGUCAAUCGCGUCGAACAGCGUc -3'
miRNA:   3'- -GCUGGCAGUUAGCGCAGCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 6734 0.82 0.133826
Target:  5'- aCGGCCGacUCGccCGCGUCGAGCAGCGc -3'
miRNA:   3'- -GCUGGC--AGUuaGCGCAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 45622 0.78 0.225699
Target:  5'- cCGAUCGUCucgcauUCGCGUCgugGAACAGCGg -3'
miRNA:   3'- -GCUGGCAGuu----AGCGCAG---CUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 8528 0.76 0.308043
Target:  5'- gCGACCGUgAAguUCGCGUCcGGCAGCa- -3'
miRNA:   3'- -GCUGGCAgUU--AGCGCAGcUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 11032 0.74 0.374665
Target:  5'- -uGCCGcacgUGAUCGCGUCGuGCGGCGUg -3'
miRNA:   3'- gcUGGCa---GUUAGCGCAGCuUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 9634 0.74 0.374665
Target:  5'- -uGCCGUgAG-CGCGUCGGACGGCa- -3'
miRNA:   3'- gcUGGCAgUUaGCGCAGCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 12668 0.74 0.392776
Target:  5'- uCGACgGgUCGAcCGCGcCGAACAGCGa -3'
miRNA:   3'- -GCUGgC-AGUUaGCGCaGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 21520 0.73 0.411447
Target:  5'- -cACUGUCGAcgggCGCGUCGAAC-GCGUa -3'
miRNA:   3'- gcUGGCAGUUa---GCGCAGCUUGuCGCA- -5'
17023 5' -52.9 NC_004333.2 + 28414 0.73 0.411447
Target:  5'- cCGugCGUuggagcggcCGAUCGCGUCGuugacGGCAGCGg -3'
miRNA:   3'- -GCugGCA---------GUUAGCGCAGC-----UUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 20565 0.73 0.430658
Target:  5'- uGAUCGUCGG-CGCGUCGggUcGCGc -3'
miRNA:   3'- gCUGGCAGUUaGCGCAGCuuGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 8169 0.73 0.450385
Target:  5'- uCGGCCGcgUCcAUCGCGUacucagUGAGCGGCGUc -3'
miRNA:   3'- -GCUGGC--AGuUAGCGCA------GCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 11619 0.72 0.460433
Target:  5'- cCGGCCGUCAcuUCGCGcgCGAAC-GUGUc -3'
miRNA:   3'- -GCUGGCAGUu-AGCGCa-GCUUGuCGCA- -5'
17023 5' -52.9 NC_004333.2 + 7018 0.72 0.460433
Target:  5'- aGAUCGUaCAccuUCGCGUCGAACAgaccgcacuGCGUg -3'
miRNA:   3'- gCUGGCA-GUu--AGCGCAGCUUGU---------CGCA- -5'
17023 5' -52.9 NC_004333.2 + 3679 0.72 0.480877
Target:  5'- gCGACgGUCugagccGUCGCGUCGuAGCuGCGg -3'
miRNA:   3'- -GCUGgCAGu-----UAGCGCAGC-UUGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 24427 0.72 0.491263
Target:  5'- aCGACuCGUCg--CGCGUCGAGCuGCc- -3'
miRNA:   3'- -GCUG-GCAGuuaGCGCAGCUUGuCGca -5'
17023 5' -52.9 NC_004333.2 + 1614 0.72 0.512338
Target:  5'- uCGACCGcauccgggUCGAaUGCGUCGucgGCGGCGUa -3'
miRNA:   3'- -GCUGGC--------AGUUaGCGCAGCu--UGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 28085 0.72 0.512338
Target:  5'- gCGAUCugGUUcAUCGUGUCGAGCGGCa- -3'
miRNA:   3'- -GCUGG--CAGuUAGCGCAGCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 30762 0.71 0.523015
Target:  5'- uGAUCGUCAG-CGCGUCGuGACcGCGc -3'
miRNA:   3'- gCUGGCAGUUaGCGCAGC-UUGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 30645 0.71 0.544616
Target:  5'- uGugCG-CGAUCGCuUCGGACAGUGc -3'
miRNA:   3'- gCugGCaGUUAGCGcAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 30893 0.71 0.566498
Target:  5'- uCGACUgGUUGAaCGCGUCGAGC-GCGUc -3'
miRNA:   3'- -GCUGG-CAGUUaGCGCAGCUUGuCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.