miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17023 5' -52.9 NC_004333.2 + 790 0.67 0.753531
Target:  5'- -uGCgCGUCGGUCgGCGcuuucguuucaUCGGGCGGCGUg -3'
miRNA:   3'- gcUG-GCAGUUAG-CGC-----------AGCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 1614 0.72 0.512338
Target:  5'- uCGACCGcauccgggUCGAaUGCGUCGucgGCGGCGUa -3'
miRNA:   3'- -GCUGGC--------AGUUaGCGCAGCu--UGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 2307 0.67 0.774221
Target:  5'- uGGCCGgCAcgccCGCGUUGAACuGGCGg -3'
miRNA:   3'- gCUGGCaGUua--GCGCAGCUUG-UCGCa -5'
17023 5' -52.9 NC_004333.2 + 2974 0.66 0.813694
Target:  5'- uGGCCGggcuUCGUGgcgCGGACAGCu- -3'
miRNA:   3'- gCUGGCaguuAGCGCa--GCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 3679 0.72 0.480877
Target:  5'- gCGACgGUCugagccGUCGCGUCGuAGCuGCGg -3'
miRNA:   3'- -GCUGgCAGu-----UAGCGCAGC-UUGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 3783 0.67 0.784345
Target:  5'- aGGCCGUuguaccgcgCAcgCGcCGcCGAGCAGCGc -3'
miRNA:   3'- gCUGGCA---------GUuaGC-GCaGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 5058 0.68 0.710719
Target:  5'- uGGCCGacgUCGG-CGCGgcgcUGAACAGCGUc -3'
miRNA:   3'- gCUGGC---AGUUaGCGCa---GCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 5089 0.7 0.59971
Target:  5'- cCGAuacUCGUUGAUCGCGucUCGAuguGCGGCGUc -3'
miRNA:   3'- -GCU---GGCAGUUAGCGC--AGCU---UGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 5135 0.66 0.832297
Target:  5'- uCGuCCGUCAcgggCGagccgcccguguUGUCGAGCAGCGc -3'
miRNA:   3'- -GCuGGCAGUua--GC------------GCAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 5955 0.68 0.688788
Target:  5'- uCGGCCGUCGugcgGUCGaaGUCGAGCcGCa- -3'
miRNA:   3'- -GCUGGCAGU----UAGCg-CAGCUUGuCGca -5'
17023 5' -52.9 NC_004333.2 + 6355 0.69 0.655499
Target:  5'- gCGGCCGggcgCcGUCGUgccGUCGGGCAGCu- -3'
miRNA:   3'- -GCUGGCa---GuUAGCG---CAGCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 6734 0.82 0.133826
Target:  5'- aCGGCCGacUCGccCGCGUCGAGCAGCGc -3'
miRNA:   3'- -GCUGGC--AGUuaGCGCAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 7018 0.72 0.460433
Target:  5'- aGAUCGUaCAccuUCGCGUCGAACAgaccgcacuGCGUg -3'
miRNA:   3'- gCUGGCA-GUu--AGCGCAGCUUGU---------CGCA- -5'
17023 5' -52.9 NC_004333.2 + 8169 0.73 0.450385
Target:  5'- uCGGCCGcgUCcAUCGCGUacucagUGAGCGGCGUc -3'
miRNA:   3'- -GCUGGC--AGuUAGCGCA------GCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 8528 0.76 0.308043
Target:  5'- gCGACCGUgAAguUCGCGUCcGGCAGCa- -3'
miRNA:   3'- -GCUGGCAgUU--AGCGCAGcUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 9276 0.66 0.813694
Target:  5'- uGGCCGUgcCGAUCaGCG-CGAaGCGGCGc -3'
miRNA:   3'- gCUGGCA--GUUAG-CGCaGCU-UGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 9634 0.74 0.374665
Target:  5'- -uGCCGUgAG-CGCGUCGGACGGCa- -3'
miRNA:   3'- gcUGGCAgUUaGCGCAGCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 10036 0.7 0.622009
Target:  5'- gCGGCCGg--GUCgGCGUCGAAC-GCGa -3'
miRNA:   3'- -GCUGGCaguUAG-CGCAGCUUGuCGCa -5'
17023 5' -52.9 NC_004333.2 + 10506 0.68 0.74299
Target:  5'- cCGGCCGaCGAgCGgGUCGGGCGcGCGc -3'
miRNA:   3'- -GCUGGCaGUUaGCgCAGCUUGU-CGCa -5'
17023 5' -52.9 NC_004333.2 + 10990 0.66 0.813694
Target:  5'- -cACCGgcg--CGCGUCGugAGCGGCGUg -3'
miRNA:   3'- gcUGGCaguuaGCGCAGC--UUGUCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.