miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17024 5' -54.3 NC_004333.2 + 36873 1.09 0.000918
Target:  5'- aGUGCAACAAGGCGACGGCGCAGUUCAa -3'
miRNA:   3'- -CACGUUGUUCCGCUGCCGCGUCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 22271 0.76 0.20291
Target:  5'- cGUGCAagcGCAGGGCGGCGaaGCGCGGcgCu -3'
miRNA:   3'- -CACGU---UGUUCCGCUGC--CGCGUCaaGu -5'
17024 5' -54.3 NC_004333.2 + 38703 0.75 0.238746
Target:  5'- -aGCAGCucGGCGGCGGUGCGGc--- -3'
miRNA:   3'- caCGUUGuuCCGCUGCCGCGUCaagu -5'
17024 5' -54.3 NC_004333.2 + 45430 0.73 0.310029
Target:  5'- -gGCGGC--GGCGACGGCGCA-UUCGc -3'
miRNA:   3'- caCGUUGuuCCGCUGCCGCGUcAAGU- -5'
17024 5' -54.3 NC_004333.2 + 32077 0.72 0.360058
Target:  5'- -cGCGACGAucgcauagaucGGCGuCGGCGC-GUUCAg -3'
miRNA:   3'- caCGUUGUU-----------CCGCuGCCGCGuCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 27667 0.72 0.360058
Target:  5'- -aGCGGCGcGGCGGCGGCcggcaGCGGUUg- -3'
miRNA:   3'- caCGUUGUuCCGCUGCCG-----CGUCAAgu -5'
17024 5' -54.3 NC_004333.2 + 31161 0.72 0.363587
Target:  5'- cGUGCAcgagucgaGCGcGGCGACGGCGUAugccgcgaguugcgcGUUCGg -3'
miRNA:   3'- -CACGU--------UGUuCCGCUGCCGCGU---------------CAAGU- -5'
17024 5' -54.3 NC_004333.2 + 18590 0.72 0.368031
Target:  5'- cGUGCAACAaacgaccGGcGCGGCaGGCGCGGgcggCAa -3'
miRNA:   3'- -CACGUUGU-------UC-CGCUG-CCGCGUCaa--GU- -5'
17024 5' -54.3 NC_004333.2 + 10634 0.71 0.387103
Target:  5'- aUGCAAuCAAGGUGGCGGCGaagaaaGGUgacgUCAc -3'
miRNA:   3'- cACGUU-GUUCCGCUGCCGCg-----UCA----AGU- -5'
17024 5' -54.3 NC_004333.2 + 13815 0.71 0.387103
Target:  5'- -cGC-GCGAGacgcaGCGACGGCGaCGGUUCGa -3'
miRNA:   3'- caCGuUGUUC-----CGCUGCCGC-GUCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 30629 0.71 0.415452
Target:  5'- cGUGCAGCAGcGCGGCaaGGCGCGGc--- -3'
miRNA:   3'- -CACGUUGUUcCGCUG--CCGCGUCaagu -5'
17024 5' -54.3 NC_004333.2 + 6569 0.71 0.42518
Target:  5'- -aGCAcgaGCGAGcGCGugGGCcGCAGUgCAa -3'
miRNA:   3'- caCGU---UGUUC-CGCugCCG-CGUCAaGU- -5'
17024 5' -54.3 NC_004333.2 + 24881 0.71 0.42518
Target:  5'- uUGCgGAUAAGGCGGCGG-GUAGUUg- -3'
miRNA:   3'- cACG-UUGUUCCGCUGCCgCGUCAAgu -5'
17024 5' -54.3 NC_004333.2 + 11336 0.7 0.435043
Target:  5'- -cGCGAUGAa--GGCGGCGCGGUUCGu -3'
miRNA:   3'- caCGUUGUUccgCUGCCGCGUCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 17875 0.7 0.445038
Target:  5'- gGUGUcGCAGGcGCGACGGCGgcCAGcUCGc -3'
miRNA:   3'- -CACGuUGUUC-CGCUGCCGC--GUCaAGU- -5'
17024 5' -54.3 NC_004333.2 + 15267 0.7 0.445038
Target:  5'- -aGCGACGAuuugccgugcuGCGGCGGCGCGG-UCAg -3'
miRNA:   3'- caCGUUGUUc----------CGCUGCCGCGUCaAGU- -5'
17024 5' -54.3 NC_004333.2 + 13961 0.7 0.455159
Target:  5'- -gGCGACuucAGGCGGCGGC-CGGUgcgCGc -3'
miRNA:   3'- caCGUUGu--UCCGCUGCCGcGUCAa--GU- -5'
17024 5' -54.3 NC_004333.2 + 2621 0.7 0.455159
Target:  5'- -cGCGACAGacCGACcGCGCGGUUCAu -3'
miRNA:   3'- caCGUUGUUccGCUGcCGCGUCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 20928 0.7 0.455159
Target:  5'- -cGaauACGAGGCGuCGGCGCAGg--- -3'
miRNA:   3'- caCgu-UGUUCCGCuGCCGCGUCaagu -5'
17024 5' -54.3 NC_004333.2 + 14815 0.7 0.465403
Target:  5'- -gGCAGCAGGcguuccaCGACGGCGCGccGUUCu -3'
miRNA:   3'- caCGUUGUUCc------GCUGCCGCGU--CAAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.