miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17024 5' -54.3 NC_004333.2 + 2621 0.7 0.455159
Target:  5'- -cGCGACAGacCGACcGCGCGGUUCAu -3'
miRNA:   3'- caCGUUGUUccGCUGcCGCGUCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 3305 0.67 0.618474
Target:  5'- uGUGC-GCGcGGCGGCG-CGCGGUUgAa -3'
miRNA:   3'- -CACGuUGUuCCGCUGCcGCGUCAAgU- -5'
17024 5' -54.3 NC_004333.2 + 4647 0.66 0.686206
Target:  5'- -cGCGAuCAuGGCGACGG-GCAGgcCGg -3'
miRNA:   3'- caCGUU-GUuCCGCUGCCgCGUCaaGU- -5'
17024 5' -54.3 NC_004333.2 + 6569 0.71 0.42518
Target:  5'- -aGCAcgaGCGAGcGCGugGGCcGCAGUgCAa -3'
miRNA:   3'- caCGU---UGUUC-CGCugCCG-CGUCAaGU- -5'
17024 5' -54.3 NC_004333.2 + 6997 0.67 0.618474
Target:  5'- aGUGCuGCGAGuuGGcCGGUGCAGaUUCAu -3'
miRNA:   3'- -CACGuUGUUCcgCU-GCCGCGUC-AAGU- -5'
17024 5' -54.3 NC_004333.2 + 8296 0.67 0.663723
Target:  5'- aUGUAGguAGGCGGCG-CGCGGggCu -3'
miRNA:   3'- cACGUUguUCCGCUGCcGCGUCaaGu -5'
17024 5' -54.3 NC_004333.2 + 10634 0.71 0.387103
Target:  5'- aUGCAAuCAAGGUGGCGGCGaagaaaGGUgacgUCAc -3'
miRNA:   3'- cACGUU-GUUCCGCUGCCGCg-----UCA----AGU- -5'
17024 5' -54.3 NC_004333.2 + 11336 0.7 0.435043
Target:  5'- -cGCGAUGAa--GGCGGCGCGGUUCGu -3'
miRNA:   3'- caCGUUGUUccgCUGCCGCGUCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 11864 0.68 0.558924
Target:  5'- aUGCGACGcccggcgacuacucGGGCGGCgcguaucgcauGGCGCAGgacgUCGc -3'
miRNA:   3'- cACGUUGU--------------UCCGCUG-----------CCGCGUCa---AGU- -5'
17024 5' -54.3 NC_004333.2 + 13009 0.69 0.486243
Target:  5'- aUGCAACugccGGCGAUGGCGguGc--- -3'
miRNA:   3'- cACGUUGuu--CCGCUGCCGCguCaagu -5'
17024 5' -54.3 NC_004333.2 + 13296 0.67 0.65243
Target:  5'- -gGCAACAucgaAGGCaACGGCGgGGgaCAg -3'
miRNA:   3'- caCGUUGU----UCCGcUGCCGCgUCaaGU- -5'
17024 5' -54.3 NC_004333.2 + 13815 0.71 0.387103
Target:  5'- -cGC-GCGAGacgcaGCGACGGCGaCGGUUCGa -3'
miRNA:   3'- caCGuUGUUC-----CGCUGCCGC-GUCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 13961 0.7 0.455159
Target:  5'- -gGCGACuucAGGCGGCGGC-CGGUgcgCGc -3'
miRNA:   3'- caCGUUGu--UCCGCUGCCGcGUCAa--GU- -5'
17024 5' -54.3 NC_004333.2 + 14815 0.7 0.465403
Target:  5'- -gGCAGCAGGcguuccaCGACGGCGCGccGUUCu -3'
miRNA:   3'- caCGUUGUUCc------GCUGCCGCGU--CAAGu -5'
17024 5' -54.3 NC_004333.2 + 15267 0.7 0.445038
Target:  5'- -aGCGACGAuuugccgugcuGCGGCGGCGCGG-UCAg -3'
miRNA:   3'- caCGUUGUUc----------CGCUGCCGCGUCaAGU- -5'
17024 5' -54.3 NC_004333.2 + 16211 0.67 0.65243
Target:  5'- ---gAGCAGGGCGGCuucGGCGU-GUUCAa -3'
miRNA:   3'- cacgUUGUUCCGCUG---CCGCGuCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 16857 0.67 0.629794
Target:  5'- -cGCGGcCAAGGCGAUcgacgGGCGaCuGUUCGg -3'
miRNA:   3'- caCGUU-GUUCCGCUG-----CCGC-GuCAAGU- -5'
17024 5' -54.3 NC_004333.2 + 16873 0.67 0.663723
Target:  5'- cGUGCuc---GGCGuCGGCGCAGgugCGg -3'
miRNA:   3'- -CACGuuguuCCGCuGCCGCGUCaa-GU- -5'
17024 5' -54.3 NC_004333.2 + 17492 0.66 0.719487
Target:  5'- uUGCcGCcgccGGCGGCGGCGCgaacGGcUUCAu -3'
miRNA:   3'- cACGuUGuu--CCGCUGCCGCG----UC-AAGU- -5'
17024 5' -54.3 NC_004333.2 + 17875 0.7 0.445038
Target:  5'- gGUGUcGCAGGcGCGACGGCGgcCAGcUCGc -3'
miRNA:   3'- -CACGuUGUUC-CGCUGCCGC--GUCaAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.