miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
17025	5'	-52.5	NC_004333.2	+	23187	0.66	0.839598
	Target:  5'- uGAcAGGcgGCGcGGAcgcAGACGUUGCGCUc -3' miRNA:   3'- gCU-UCCa-CGU-CCU---UUUGCAGCGCGAc -5'
17025	5'	-52.5	NC_004333.2	+	29453	0.66	0.836876
	Target:  5'- uCGAcGGUGC-GGAAGugGgucauuucgacgacUCGCGCg- -3' miRNA:   3'- -GCUuCCACGuCCUUUugC--------------AGCGCGac -5'
17025	5'	-52.5	NC_004333.2	+	28386	0.67	0.782589
	Target:  5'- aCGgcGGUGCGGGAAccaauaaccgccgcAaucgcaacgugucgcGCcgguGUCGCGCUGa -3' miRNA:   3'- -GCuuCCACGUCCUU--------------U---------------UG----CAGCGCGAC- -5'
17025	5'	-52.5	NC_004333.2	+	23034	0.68	0.728592
	Target:  5'- uCGGAGGcaucggGCAGGccgcGAACGUgCGCGCc- -3' miRNA:   3'- -GCUUCCa-----CGUCCu---UUUGCA-GCGCGac -5'
17025	5'	-52.5	NC_004333.2	+	40576	0.68	0.728592
	Target:  5'- uCGcAGGgcaucaucacGCAGGAGGACGUCcuGCGCa- -3' miRNA:   3'- -GCuUCCa---------CGUCCUUUUGCAG--CGCGac -5'
17025	5'	-52.5	NC_004333.2	+	13197	0.68	0.695481
	Target:  5'- aCGAucguGUGCAGGc--GCGUCGCGUg- -3' miRNA:   3'- -GCUuc--CACGUCCuuuUGCAGCGCGac -5'
17025	5'	-52.5	NC_004333.2	+	5220	0.69	0.650479
	Target:  5'- gCGAGGGUGCGGGuu-GCa--GCGCa- -3' miRNA:   3'- -GCUUCCACGUCCuuuUGcagCGCGac -5'
17025	5'	-52.5	NC_004333.2	+	41166	0.71	0.538154
	Target:  5'- gCGAAGGUGUAcGAucuGACGUCGgGCc- -3' miRNA:   3'- -GCUUCCACGUcCUu--UUGCAGCgCGac -5'
17025	5'	-52.5	NC_004333.2	+	10954	0.78	0.224991
	Target:  5'- uCGuuGGUGCGGGccacAGCGUCGCGCg- -3' miRNA:   3'- -GCuuCCACGUCCuu--UUGCAGCGCGac -5'
17025	5'	-52.5	NC_004333.2	+	36695	1.09	0.001533
	Target:  5'- gCGAAGGUGCAGGAAAACGUCGCGCUGa -3' miRNA:   3'- -GCUUCCACGUCCUUUUGCAGCGCGAC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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