miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17027 3' -60.2 NC_004333.2 + 2687 0.71 0.223145
Target:  5'- -aGCgUCGCGCCgGcggCGGCCGACa- -3'
miRNA:   3'- caCG-AGCGCGGgCaaaGCCGGCUGgc -5'
17027 3' -60.2 NC_004333.2 + 2732 0.73 0.150992
Target:  5'- uUGUUCGUGCCCGUcacagccgagaucgCGGCCGccguGCCGg -3'
miRNA:   3'- cACGAGCGCGGGCAaa------------GCCGGC----UGGC- -5'
17027 3' -60.2 NC_004333.2 + 3125 0.67 0.371954
Target:  5'- aGUuCUCGaCGUCCGUUuccuggaagaagUCGGCCagcuGACCGg -3'
miRNA:   3'- -CAcGAGC-GCGGGCAA------------AGCCGG----CUGGC- -5'
17027 3' -60.2 NC_004333.2 + 3555 0.77 0.077985
Target:  5'- gGUGC-CGCGCagCGcgUCGGCCGACCa -3'
miRNA:   3'- -CACGaGCGCGg-GCaaAGCCGGCUGGc -5'
17027 3' -60.2 NC_004333.2 + 4814 0.7 0.238406
Target:  5'- -cGCUCauacgcCGCCCGgaaucuggauagUCGGCUGACCGu -3'
miRNA:   3'- caCGAGc-----GCGGGCaa----------AGCCGGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 6350 0.67 0.380519
Target:  5'- -cGCUCGCGgCCGggcgccgUCGuGCCgucgggcagcuuGACCGg -3'
miRNA:   3'- caCGAGCGCgGGCaa-----AGC-CGG------------CUGGC- -5'
17027 3' -60.2 NC_004333.2 + 8538 0.71 0.223145
Target:  5'- -aGUUCGCGUCCGgcagcagUCGGCCG-CUa -3'
miRNA:   3'- caCGAGCGCGGGCaa-----AGCCGGCuGGc -5'
17027 3' -60.2 NC_004333.2 + 9262 0.66 0.425267
Target:  5'- -cGuCUCGUGCuuGU--UGGCCGuGCCGa -3'
miRNA:   3'- caC-GAGCGCGggCAaaGCCGGC-UGGC- -5'
17027 3' -60.2 NC_004333.2 + 9514 0.66 0.452615
Target:  5'- cUGCUCGacgaaguacgacuUGCCCGUgccgcccgGGCCGAUCa -3'
miRNA:   3'- cACGAGC-------------GCGGGCAaag-----CCGGCUGGc -5'
17027 3' -60.2 NC_004333.2 + 10492 0.66 0.444024
Target:  5'- -cGCcaCGCGCCgGgc-CGGCCGACg- -3'
miRNA:   3'- caCGa-GCGCGGgCaaaGCCGGCUGgc -5'
17027 3' -60.2 NC_004333.2 + 11041 0.67 0.363522
Target:  5'- -cGCcaagCGCGCCCGggUCGaauucUCGACCGc -3'
miRNA:   3'- caCGa---GCGCGGGCaaAGCc----GGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 11720 0.68 0.331136
Target:  5'- cGUGCUgGCGUCCugcgCGauguccggcaGCCGACCGg -3'
miRNA:   3'- -CACGAgCGCGGGcaaaGC----------CGGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 11844 0.69 0.291573
Target:  5'- -aGCUUGCGCCgGUacaucgcuuccgucUgcCGGUCGGCCGa -3'
miRNA:   3'- caCGAGCGCGGgCA--------------Aa-GCCGGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 13532 0.72 0.191084
Target:  5'- cGUGCUCGCGgcguugccgCCGg--CGGCCaGGCCGg -3'
miRNA:   3'- -CACGAGCGCg--------GGCaaaGCCGG-CUGGC- -5'
17027 3' -60.2 NC_004333.2 + 13876 0.72 0.191084
Target:  5'- -cGC-CGCGCCgCGcgaagUCGGCCGGCaCGg -3'
miRNA:   3'- caCGaGCGCGG-GCaa---AGCCGGCUG-GC- -5'
17027 3' -60.2 NC_004333.2 + 14243 0.75 0.108738
Target:  5'- cGUGCgcgCGCGCCUcUUUCGaGCCGAgCGg -3'
miRNA:   3'- -CACGa--GCGCGGGcAAAGC-CGGCUgGC- -5'
17027 3' -60.2 NC_004333.2 + 14866 0.68 0.331136
Target:  5'- cGUGg-CGCGCCgGUUggcucgaugCGGCCGACg- -3'
miRNA:   3'- -CACgaGCGCGGgCAAa--------GCCGGCUGgc -5'
17027 3' -60.2 NC_004333.2 + 15117 0.69 0.300923
Target:  5'- uUGC-CaGCGCUCGU---GGCCGACCGc -3'
miRNA:   3'- cACGaG-CGCGGGCAaagCCGGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 16870 0.66 0.406089
Target:  5'- -cGC-CGUGCUCGgcgUCGGCgcaggugCGGCCGg -3'
miRNA:   3'- caCGaGCGCGGGCaa-AGCCG-------GCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 17627 0.73 0.150588
Target:  5'- -gGC-CGCGCCCGgugccgUGGCCGACaCGu -3'
miRNA:   3'- caCGaGCGCGGGCaaa---GCCGGCUG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.