miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17027 3' -60.2 NC_004333.2 + 37667 0.77 0.075836
Target:  5'- -aGCgCGCGCCCGacccgcucgUCGGCCGGCCc -3'
miRNA:   3'- caCGaGCGCGGGCaa-------AGCCGGCUGGc -5'
17027 3' -60.2 NC_004333.2 + 33285 0.68 0.331136
Target:  5'- -aGCcgagCGCGCgCGUUgcgUCGGCCGcAUCGa -3'
miRNA:   3'- caCGa---GCGCGgGCAA---AGCCGGC-UGGC- -5'
17027 3' -60.2 NC_004333.2 + 21165 0.68 0.339029
Target:  5'- gGUGCgcuUCGCGCugCCGca--GGCCGGCCu -3'
miRNA:   3'- -CACG---AGCGCG--GGCaaagCCGGCUGGc -5'
17027 3' -60.2 NC_004333.2 + 37851 0.66 0.434587
Target:  5'- -cGCgaUCGCGUCCGgacUCGaGCCcgaGGCCGg -3'
miRNA:   3'- caCG--AGCGCGGGCaa-AGC-CGG---CUGGC- -5'
17027 3' -60.2 NC_004333.2 + 2732 0.73 0.150992
Target:  5'- uUGUUCGUGCCCGUcacagccgagaucgCGGCCGccguGCCGg -3'
miRNA:   3'- cACGAGCGCGGGCAaa------------GCCGGC----UGGC- -5'
17027 3' -60.2 NC_004333.2 + 20214 0.73 0.158853
Target:  5'- -gGCUCGCGCUuuCGUggCGGCgauCGACCGc -3'
miRNA:   3'- caCGAGCGCGG--GCAaaGCCG---GCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 13876 0.72 0.191084
Target:  5'- -cGC-CGCGCCgCGcgaagUCGGCCGGCaCGg -3'
miRNA:   3'- caCGaGCGCGG-GCaa---AGCCGGCUG-GC- -5'
17027 3' -60.2 NC_004333.2 + 31631 0.71 0.196132
Target:  5'- -gGC-CGCGCgCGUgaacagUCGGCCGAUCu -3'
miRNA:   3'- caCGaGCGCGgGCAa-----AGCCGGCUGGc -5'
17027 3' -60.2 NC_004333.2 + 2687 0.71 0.223145
Target:  5'- -aGCgUCGCGCCgGcggCGGCCGACa- -3'
miRNA:   3'- caCG-AGCGCGGgCaaaGCCGGCUGgc -5'
17027 3' -60.2 NC_004333.2 + 11720 0.68 0.331136
Target:  5'- cGUGCUgGCGUCCugcgCGauguccggcaGCCGACCGg -3'
miRNA:   3'- -CACGAgCGCGGGcaaaGC----------CGGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 4814 0.7 0.238406
Target:  5'- -cGCUCauacgcCGCCCGgaaucuggauagUCGGCUGACCGu -3'
miRNA:   3'- caCGAGc-----GCGGGCaa----------AGCCGGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 35983 0.71 0.2175
Target:  5'- cGUGCUCGCGaCCUGguucgCGGUCG-CCu -3'
miRNA:   3'- -CACGAGCGC-GGGCaaa--GCCGGCuGGc -5'
17027 3' -60.2 NC_004333.2 + 3555 0.77 0.077985
Target:  5'- gGUGC-CGCGCagCGcgUCGGCCGACCa -3'
miRNA:   3'- -CACGaGCGCGg-GCaaAGCCGGCUGGc -5'
17027 3' -60.2 NC_004333.2 + 11844 0.69 0.291573
Target:  5'- -aGCUUGCGCCgGUacaucgcuuccgucUgcCGGUCGGCCGa -3'
miRNA:   3'- caCGAGCGCGGgCA--------------Aa-GCCGGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 14243 0.75 0.108738
Target:  5'- cGUGCgcgCGCGCCUcUUUCGaGCCGAgCGg -3'
miRNA:   3'- -CACGa--GCGCGGGcAAAGC-CGGCUgGC- -5'
17027 3' -60.2 NC_004333.2 + 44959 0.71 0.206577
Target:  5'- cUGCgCGCGCaCGUcggCGGCCGACUGc -3'
miRNA:   3'- cACGaGCGCGgGCAaa-GCCGGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 30477 0.68 0.315757
Target:  5'- -gGCUgCGCcuaccuugucgaGCCCGagcgugCGGCCGACCa -3'
miRNA:   3'- caCGA-GCG------------CGGGCaaa---GCCGGCUGGc -5'
17027 3' -60.2 NC_004333.2 + 47725 0.68 0.331919
Target:  5'- -gGCacgUCGCGCgCCGUggccucguacacccCGGCCGACUGu -3'
miRNA:   3'- caCG---AGCGCG-GGCAaa------------GCCGGCUGGC- -5'
17027 3' -60.2 NC_004333.2 + 17627 0.73 0.150588
Target:  5'- -gGC-CGCGCCCGgugccgUGGCCGACaCGu -3'
miRNA:   3'- caCGaGCGCGGGCaaa---GCCGGCUG-GC- -5'
17027 3' -60.2 NC_004333.2 + 13532 0.72 0.191084
Target:  5'- cGUGCUCGCGgcguugccgCCGg--CGGCCaGGCCGg -3'
miRNA:   3'- -CACGAGCGCg--------GGCaaaGCCGG-CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.