miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17029 5' -61.1 NC_004333.2 + 35640 1.08 0.000284
Target:  5'- cCGCCCCGAUCAGGUAGCGGCACGCCUg -3'
miRNA:   3'- -GCGGGGCUAGUCCAUCGCCGUGCGGA- -5'
17029 5' -61.1 NC_004333.2 + 44953 0.79 0.042816
Target:  5'- uGCCCgGcgucAUCGGGgcgGGCGGCGCGCCg -3'
miRNA:   3'- gCGGGgC----UAGUCCa--UCGCCGUGCGGa -5'
17029 5' -61.1 NC_004333.2 + 6757 0.74 0.111382
Target:  5'- gCGCCCCGGUCgcgcgccucgAGGUAGCcgaucgcauacgacaGCGCGCCg -3'
miRNA:   3'- -GCGGGGCUAG----------UCCAUCGc--------------CGUGCGGa -5'
17029 5' -61.1 NC_004333.2 + 9542 0.73 0.122901
Target:  5'- cCGCCcgggCCGAUCagaacgggcaccacGGGcAGCGGCGCGCCc -3'
miRNA:   3'- -GCGG----GGCUAG--------------UCCaUCGCCGUGCGGa -5'
17029 5' -61.1 NC_004333.2 + 28080 0.73 0.123909
Target:  5'- uGCgCgCGAUCuGGUucaucgugucgAGCGGCACGCCg -3'
miRNA:   3'- gCGgG-GCUAGuCCA-----------UCGCCGUGCGGa -5'
17029 5' -61.1 NC_004333.2 + 39290 0.71 0.166578
Target:  5'- uCGCCaaGAUCaAGGUGcGCGGCuaaccGCGCCg -3'
miRNA:   3'- -GCGGggCUAG-UCCAU-CGCCG-----UGCGGa -5'
17029 5' -61.1 NC_004333.2 + 26996 0.71 0.185123
Target:  5'- uGCCCCGAgCAGGccggccuGCGGCAgCGCg- -3'
miRNA:   3'- gCGGGGCUaGUCCau-----CGCCGU-GCGga -5'
17029 5' -61.1 NC_004333.2 + 22993 0.69 0.23359
Target:  5'- gGUCgCCGAgagCAGGaAGCGGaaCACGCCg -3'
miRNA:   3'- gCGG-GGCUa--GUCCaUCGCC--GUGCGGa -5'
17029 5' -61.1 NC_004333.2 + 33439 0.69 0.245717
Target:  5'- aGCCgCGAguccggCAgcauuGGcAGCGGCGCGCCg -3'
miRNA:   3'- gCGGgGCUa-----GU-----CCaUCGCCGUGCGGa -5'
17029 5' -61.1 NC_004333.2 + 32248 0.68 0.278318
Target:  5'- uGCCCCGAUU--GUGGCGGCgAUGgCa -3'
miRNA:   3'- gCGGGGCUAGucCAUCGCCG-UGCgGa -5'
17029 5' -61.1 NC_004333.2 + 11394 0.68 0.285238
Target:  5'- aGCCCUu-UCAGGUcGCGGCcCGCg- -3'
miRNA:   3'- gCGGGGcuAGUCCAuCGCCGuGCGga -5'
17029 5' -61.1 NC_004333.2 + 3429 0.67 0.306072
Target:  5'- cCGCCgUCGGUCAGGUAGgccauuucguaguCGaGCuGCGCCUc -3'
miRNA:   3'- -GCGG-GGCUAGUCCAUC-------------GC-CG-UGCGGA- -5'
17029 5' -61.1 NC_004333.2 + 38600 0.67 0.321108
Target:  5'- gGCgCUGA--AGGUGGCGGCAacgaacuCGCCa -3'
miRNA:   3'- gCGgGGCUagUCCAUCGCCGU-------GCGGa -5'
17029 5' -61.1 NC_004333.2 + 695 0.67 0.321874
Target:  5'- gCGCCUCGuUCAGc--GCGGCAguCGCCg -3'
miRNA:   3'- -GCGGGGCuAGUCcauCGCCGU--GCGGa -5'
17029 5' -61.1 NC_004333.2 + 45528 0.67 0.32961
Target:  5'- gCGCCCCGcauUCGagcGGUGGUGGU-CGCUUu -3'
miRNA:   3'- -GCGGGGCu--AGU---CCAUCGCCGuGCGGA- -5'
17029 5' -61.1 NC_004333.2 + 28762 0.67 0.336689
Target:  5'- gCGCCgcgucgaCCGcgCGGGUcgcGGCGGCGCGaCUUc -3'
miRNA:   3'- -GCGG-------GGCuaGUCCA---UCGCCGUGC-GGA- -5'
17029 5' -61.1 NC_004333.2 + 8290 0.67 0.345491
Target:  5'- -uCCuuGAUgUAGGUAgGCGGCGCGCg- -3'
miRNA:   3'- gcGGggCUA-GUCCAU-CGCCGUGCGga -5'
17029 5' -61.1 NC_004333.2 + 2848 0.66 0.353635
Target:  5'- gGCUUCGAUCAGcGUuGCGGCGuuCGCg- -3'
miRNA:   3'- gCGGGGCUAGUC-CAuCGCCGU--GCGga -5'
17029 5' -61.1 NC_004333.2 + 5884 0.66 0.353635
Target:  5'- aCGCCUCGGUCGGcaccuuGCGGCcgguCGCUUu -3'
miRNA:   3'- -GCGGGGCUAGUCcau---CGCCGu---GCGGA- -5'
17029 5' -61.1 NC_004333.2 + 9279 0.66 0.353635
Target:  5'- cCGUgCCGAUCAGcGcgaAGCGGCGCGg-- -3'
miRNA:   3'- -GCGgGGCUAGUC-Ca--UCGCCGUGCgga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.