Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17029 | 5' | -61.1 | NC_004333.2 | + | 22993 | 0.69 | 0.23359 |
Target: 5'- gGUCgCCGAgagCAGGaAGCGGaaCACGCCg -3' miRNA: 3'- gCGG-GGCUa--GUCCaUCGCC--GUGCGGa -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 6757 | 0.74 | 0.111382 |
Target: 5'- gCGCCCCGGUCgcgcgccucgAGGUAGCcgaucgcauacgacaGCGCGCCg -3' miRNA: 3'- -GCGGGGCUAG----------UCCAUCGc--------------CGUGCGGa -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 13954 | 0.66 | 0.361914 |
Target: 5'- cCGCCuuGGcgacuUCAGGcGGCGGCcgguGCGCg- -3' miRNA: 3'- -GCGGggCU-----AGUCCaUCGCCG----UGCGga -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 14252 | 0.66 | 0.361914 |
Target: 5'- gCGCCUCuuUCgAGccgagcGGCGGCACGCCUu -3' miRNA: 3'- -GCGGGGcuAG-UCca----UCGCCGUGCGGA- -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 8290 | 0.67 | 0.345491 |
Target: 5'- -uCCuuGAUgUAGGUAgGCGGCGCGCg- -3' miRNA: 3'- gcGGggCUA-GUCCAU-CGCCGUGCGga -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 28762 | 0.67 | 0.336689 |
Target: 5'- gCGCCgcgucgaCCGcgCGGGUcgcGGCGGCGCGaCUUc -3' miRNA: 3'- -GCGG-------GGCuaGUCCA---UCGCCGUGC-GGA- -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 23387 | 0.66 | 0.396354 |
Target: 5'- aGUCCgGA-CAGG--GCGGuCACGCCg -3' miRNA: 3'- gCGGGgCUaGUCCauCGCC-GUGCGGa -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 9625 | 0.66 | 0.378871 |
Target: 5'- gCGCaCCGG-CuGccGGCGGCGCGCCUg -3' miRNA: 3'- -GCGgGGCUaGuCcaUCGCCGUGCGGA- -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 2848 | 0.66 | 0.353635 |
Target: 5'- gGCUUCGAUCAGcGUuGCGGCGuuCGCg- -3' miRNA: 3'- gCGGGGCUAGUC-CAuCGCCGU--GCGga -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 45528 | 0.67 | 0.32961 |
Target: 5'- gCGCCCCGcauUCGagcGGUGGUGGU-CGCUUu -3' miRNA: 3'- -GCGGGGCu--AGU---CCAUCGCCGuGCGGA- -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 33439 | 0.69 | 0.245717 |
Target: 5'- aGCCgCGAguccggCAgcauuGGcAGCGGCGCGCCg -3' miRNA: 3'- gCGGgGCUa-----GU-----CCaUCGCCGUGCGGa -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 11394 | 0.68 | 0.285238 |
Target: 5'- aGCCCUu-UCAGGUcGCGGCcCGCg- -3' miRNA: 3'- gCGGGGcuAGUCCAuCGCCGuGCGga -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 38638 | 0.66 | 0.370326 |
Target: 5'- cCGUUCUGAUCGGcccgGGCGGCACGg-- -3' miRNA: 3'- -GCGGGGCUAGUCca--UCGCCGUGCgga -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 28080 | 0.73 | 0.123909 |
Target: 5'- uGCgCgCGAUCuGGUucaucgugucgAGCGGCACGCCg -3' miRNA: 3'- gCGgG-GCUAGuCCA-----------UCGCCGUGCGGa -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 26996 | 0.71 | 0.185123 |
Target: 5'- uGCCCCGAgCAGGccggccuGCGGCAgCGCg- -3' miRNA: 3'- gCGGGGCUaGUCCau-----CGCCGU-GCGga -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 32248 | 0.68 | 0.278318 |
Target: 5'- uGCCCCGAUU--GUGGCGGCgAUGgCa -3' miRNA: 3'- gCGGGGCUAGucCAUCGCCG-UGCgGa -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 3429 | 0.67 | 0.306072 |
Target: 5'- cCGCCgUCGGUCAGGUAGgccauuucguaguCGaGCuGCGCCUc -3' miRNA: 3'- -GCGG-GGCUAGUCCAUC-------------GC-CG-UGCGGA- -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 38600 | 0.67 | 0.321108 |
Target: 5'- gGCgCUGA--AGGUGGCGGCAacgaacuCGCCa -3' miRNA: 3'- gCGgGGCUagUCCAUCGCCGU-------GCGGa -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 27250 | 0.66 | 0.396354 |
Target: 5'- aGCCgCCGGgcgUCGGGUuGCaauccuGCGCGCCa -3' miRNA: 3'- gCGG-GGCU---AGUCCAuCGc-----CGUGCGGa -5' |
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17029 | 5' | -61.1 | NC_004333.2 | + | 46875 | 0.66 | 0.365263 |
Target: 5'- aGCUgcaauucacgCCGAUCGcGUaacgcaaccgcgccaGGCGGCGCGCCa -3' miRNA: 3'- gCGG----------GGCUAGUcCA---------------UCGCCGUGCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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