miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17036 5' -51.4 NC_004333.2 + 31349 1.09 0.002199
Target:  5'- gCUGCUCGAGCGAUACGAACGCUUCGAc -3'
miRNA:   3'- -GACGAGCUCGCUAUGCUUGCGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 28958 0.79 0.220013
Target:  5'- uUGCUCGAGCGccGUGCGgAACGCcgCGAg -3'
miRNA:   3'- gACGAGCUCGC--UAUGC-UUGCGaaGCU- -5'
17036 5' -51.4 NC_004333.2 + 32374 0.78 0.251722
Target:  5'- -gGCgUCGGcGCGAU-CGAACGCUUCGAg -3'
miRNA:   3'- gaCG-AGCU-CGCUAuGCUUGCGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 41521 0.78 0.265423
Target:  5'- cCUGCUCGAGCGcgcCGAGCGCgcugcCGAg -3'
miRNA:   3'- -GACGAGCUCGCuauGCUUGCGaa---GCU- -5'
17036 5' -51.4 NC_004333.2 + 2389 0.74 0.425789
Target:  5'- uUGUUCGAcagaaucuuGCGAU-CGAGCGUUUCGAc -3'
miRNA:   3'- gACGAGCU---------CGCUAuGCUUGCGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 11045 0.73 0.49776
Target:  5'- -cGCgUCGuGCGGcgUGAGCGCUUCGAg -3'
miRNA:   3'- gaCG-AGCuCGCUauGCUUGCGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 28820 0.71 0.585941
Target:  5'- aCUGCUCGAGCGcgAUGucGACGaagUUGAa -3'
miRNA:   3'- -GACGAGCUCGCuaUGC--UUGCga-AGCU- -5'
17036 5' -51.4 NC_004333.2 + 31126 0.71 0.608567
Target:  5'- gCUGCUCGcgcGCGAgcccgGCGAAUGCaUCGc -3'
miRNA:   3'- -GACGAGCu--CGCUa----UGCUUGCGaAGCu -5'
17036 5' -51.4 NC_004333.2 + 38263 0.71 0.642643
Target:  5'- cCUGCUCGuGUGggACGGucACGCgaUCGAc -3'
miRNA:   3'- -GACGAGCuCGCuaUGCU--UGCGa-AGCU- -5'
17036 5' -51.4 NC_004333.2 + 20256 0.7 0.687878
Target:  5'- -cGCUUGugauCGAgGCGAACGCUUCGu -3'
miRNA:   3'- gaCGAGCuc--GCUaUGCUUGCGAAGCu -5'
17036 5' -51.4 NC_004333.2 + 37799 0.7 0.699074
Target:  5'- aUGCgaagCGGcGCGAUGCGAaGCGCgucgCGAu -3'
miRNA:   3'- gACGa---GCU-CGCUAUGCU-UGCGaa--GCU- -5'
17036 5' -51.4 NC_004333.2 + 472 0.7 0.699074
Target:  5'- gUGCcggCGAGCG---UGAACGCUUCGu -3'
miRNA:   3'- gACGa--GCUCGCuauGCUUGCGAAGCu -5'
17036 5' -51.4 NC_004333.2 + 2705 0.69 0.710201
Target:  5'- cCUGCUCGGGCGGcagGUGGACGCcguagUUGGc -3'
miRNA:   3'- -GACGAGCUCGCUa--UGCUUGCGa----AGCU- -5'
17036 5' -51.4 NC_004333.2 + 31004 0.69 0.743041
Target:  5'- gCUGCUCGcGCGGUAgGuGCGCUg--- -3'
miRNA:   3'- -GACGAGCuCGCUAUgCuUGCGAagcu -5'
17036 5' -51.4 NC_004333.2 + 35798 0.69 0.753765
Target:  5'- -cGC-CGGGCGGggcgcggGCGGGCGCUaCGGc -3'
miRNA:   3'- gaCGaGCUCGCUa------UGCUUGCGAaGCU- -5'
17036 5' -51.4 NC_004333.2 + 22548 0.69 0.753765
Target:  5'- uUGC-CGAGCGA--CGAGCGCgcggUGAa -3'
miRNA:   3'- gACGaGCUCGCUauGCUUGCGaa--GCU- -5'
17036 5' -51.4 NC_004333.2 + 2483 0.69 0.753765
Target:  5'- uUGUUCGAGaCGAU-CGA-CGCUgccUCGAg -3'
miRNA:   3'- gACGAGCUC-GCUAuGCUuGCGA---AGCU- -5'
17036 5' -51.4 NC_004333.2 + 17339 0.69 0.753765
Target:  5'- -cGCUCGAcGCGuucUACGA-CGCggugUCGAc -3'
miRNA:   3'- gaCGAGCU-CGCu--AUGCUuGCGa---AGCU- -5'
17036 5' -51.4 NC_004333.2 + 43429 0.68 0.764357
Target:  5'- -cGCUCGGGuCGGgcugACGGACGCgcgcaUCGc -3'
miRNA:   3'- gaCGAGCUC-GCUa---UGCUUGCGa----AGCu -5'
17036 5' -51.4 NC_004333.2 + 19607 0.68 0.768555
Target:  5'- -cGCgaacaaggucacggCGAGCGcgGCGAGCGCggcCGAc -3'
miRNA:   3'- gaCGa-------------GCUCGCuaUGCUUGCGaa-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.