miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17036 5' -51.4 NC_004333.2 + 472 0.7 0.699074
Target:  5'- gUGCcggCGAGCG---UGAACGCUUCGu -3'
miRNA:   3'- gACGa--GCUCGCuauGCUUGCGAAGCu -5'
17036 5' -51.4 NC_004333.2 + 687 0.67 0.823497
Target:  5'- gUGCUCGGugagcGCGAUcgugccgccgcccGCGAGCGCcguggCGAg -3'
miRNA:   3'- gACGAGCU-----CGCUA-------------UGCUUGCGaa---GCU- -5'
17036 5' -51.4 NC_004333.2 + 1407 0.66 0.884649
Target:  5'- gUGC-CGAgcaGCGcgGCGGACaCUUCGAc -3'
miRNA:   3'- gACGaGCU---CGCuaUGCUUGcGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 2389 0.74 0.425789
Target:  5'- uUGUUCGAcagaaucuuGCGAU-CGAGCGUUUCGAc -3'
miRNA:   3'- gACGAGCU---------CGCUAuGCUUGCGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 2483 0.69 0.753765
Target:  5'- uUGUUCGAGaCGAU-CGA-CGCUgccUCGAg -3'
miRNA:   3'- gACGAGCUC-GCUAuGCUuGCGA---AGCU- -5'
17036 5' -51.4 NC_004333.2 + 2705 0.69 0.710201
Target:  5'- cCUGCUCGGGCGGcagGUGGACGCcguagUUGGc -3'
miRNA:   3'- -GACGAGCUCGCUa--UGCUUGCGa----AGCU- -5'
17036 5' -51.4 NC_004333.2 + 2912 0.66 0.884649
Target:  5'- -cGUUCGcgagccaaGGCGccACGcGCGCUUCGAu -3'
miRNA:   3'- gaCGAGC--------UCGCuaUGCuUGCGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 4942 0.66 0.876816
Target:  5'- aUGCggcgCGGGC-AUGCGAACGCacggcaCGAg -3'
miRNA:   3'- gACGa---GCUCGcUAUGCUUGCGaa----GCU- -5'
17036 5' -51.4 NC_004333.2 + 10184 0.68 0.805155
Target:  5'- -aGC-CGAGCGAcGCGGGCaguGCUUgGAg -3'
miRNA:   3'- gaCGaGCUCGCUaUGCUUG---CGAAgCU- -5'
17036 5' -51.4 NC_004333.2 + 10698 0.67 0.823497
Target:  5'- uUGCUCGAucugcauGCGuuugGCGAGCGCcggaaugUCGGc -3'
miRNA:   3'- gACGAGCU-------CGCua--UGCUUGCGa------AGCU- -5'
17036 5' -51.4 NC_004333.2 + 11045 0.73 0.49776
Target:  5'- -cGCgUCGuGCGGcgUGAGCGCUUCGAg -3'
miRNA:   3'- gaCG-AGCuCGCUauGCUUGCGAAGCU- -5'
17036 5' -51.4 NC_004333.2 + 15676 0.66 0.860349
Target:  5'- -aGCUucaCGAGCaucGCGAACGCUUUGu -3'
miRNA:   3'- gaCGA---GCUCGcuaUGCUUGCGAAGCu -5'
17036 5' -51.4 NC_004333.2 + 17339 0.69 0.753765
Target:  5'- -cGCUCGAcGCGuucUACGA-CGCggugUCGAc -3'
miRNA:   3'- gaCGAGCU-CGCu--AUGCUuGCGa---AGCU- -5'
17036 5' -51.4 NC_004333.2 + 17402 0.66 0.860349
Target:  5'- gCUGCUCGcgcagcGCGGUcACGAcGCGCUgaCGAu -3'
miRNA:   3'- -GACGAGCu-----CGCUA-UGCU-UGCGAa-GCU- -5'
17036 5' -51.4 NC_004333.2 + 18060 0.66 0.89515
Target:  5'- gCUGCUgcgcaguccgaccucUGGGCGAUucucuGCGAGCGCgccacguccgcaUUCGGg -3'
miRNA:   3'- -GACGA---------------GCUCGCUA-----UGCUUGCG------------AAGCU- -5'
17036 5' -51.4 NC_004333.2 + 19232 0.68 0.774805
Target:  5'- -cGCUCGAGCaAUACGGgcuggACGUgaCGAa -3'
miRNA:   3'- gaCGAGCUCGcUAUGCU-----UGCGaaGCU- -5'
17036 5' -51.4 NC_004333.2 + 19320 0.68 0.785095
Target:  5'- -cGCUUGAGCGcgccggcUACGAACGCagcCGGc -3'
miRNA:   3'- gaCGAGCUCGCu------AUGCUUGCGaa-GCU- -5'
17036 5' -51.4 NC_004333.2 + 19607 0.68 0.768555
Target:  5'- -cGCgaacaaggucacggCGAGCGcgGCGAGCGCggcCGAc -3'
miRNA:   3'- gaCGa-------------GCUCGCuaUGCUUGCGaa-GCU- -5'
17036 5' -51.4 NC_004333.2 + 20256 0.7 0.687878
Target:  5'- -cGCUUGugauCGAgGCGAACGCUUCGu -3'
miRNA:   3'- gaCGAGCuc--GCUaUGCUUGCGAAGCu -5'
17036 5' -51.4 NC_004333.2 + 20977 0.66 0.876816
Target:  5'- -cGCggcgCGGGCGAgUGgGuGCGUUUCGAg -3'
miRNA:   3'- gaCGa---GCUCGCU-AUgCuUGCGAAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.