miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 22881 0.66 0.633103
Target:  5'- gCGAUCGUacuggcgcuCGUgACGAgcagAAGCGCGGuGCu -3'
miRNA:   3'- aGCUAGCG---------GCGgUGCU----UUCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 30054 0.66 0.633103
Target:  5'- cUGAUCGaCCG-UGCcAAAGCGCGGGUc -3'
miRNA:   3'- aGCUAGC-GGCgGUGcUUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30373 0.66 0.633103
Target:  5'- -gGAUCGUCGaCCGCGAugccgaacgucgAAGCGaCcGGCg -3'
miRNA:   3'- agCUAGCGGC-GGUGCU------------UUCGC-GcUCG- -5'
17040 3' -55.9 NC_004333.2 + 8377 0.66 0.633103
Target:  5'- gCGuUCGgaCgGCCAC---AGCGCGAGCg -3'
miRNA:   3'- aGCuAGC--GgCGGUGcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 34635 0.66 0.633103
Target:  5'- cCGGccUgGCCGCCgGCGGcaacGcCGCGAGCa -3'
miRNA:   3'- aGCU--AgCGGCGG-UGCUuu--C-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 47374 0.66 0.632005
Target:  5'- ----aCGCCGCCcgaugaaACGAAAGCGCcGAccgacGCg -3'
miRNA:   3'- agcuaGCGGCGG-------UGCUUUCGCG-CU-----CG- -5'
17040 3' -55.9 NC_004333.2 + 41829 0.67 0.622116
Target:  5'- aCGAcggCGCCcgGCCGCGA--GCGguCGGGCa -3'
miRNA:   3'- aGCUa--GCGG--CGGUGCUuuCGC--GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 33313 0.67 0.622116
Target:  5'- aUCGAgccaaccgGCgCGCCACGGAucagauucguuGCGCGAGa -3'
miRNA:   3'- -AGCUag------CG-GCGGUGCUUu----------CGCGCUCg -5'
17040 3' -55.9 NC_004333.2 + 24281 0.67 0.622116
Target:  5'- cCGAaaUUGUCGCCcgGCGAcuGCGCGAc- -3'
miRNA:   3'- aGCU--AGCGGCGG--UGCUuuCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 13887 0.67 0.622116
Target:  5'- gCGAagUCgGCCGgCACGGGcuGCGCG-GCg -3'
miRNA:   3'- aGCU--AG-CGGCgGUGCUUu-CGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 20026 0.67 0.622116
Target:  5'- gCGuAUCGCUGUCAaccuCGgcGGCGCGcAGUa -3'
miRNA:   3'- aGC-UAGCGGCGGU----GCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 9274 0.67 0.622116
Target:  5'- gUUGGccgUGCCGaucagCGCGAAgcGGCGCGGGUg -3'
miRNA:   3'- -AGCUa--GCGGCg----GUGCUU--UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 46674 0.67 0.622116
Target:  5'- cCGAcUCGCCGUCGCuc--GCGCaguucGAGCa -3'
miRNA:   3'- aGCU-AGCGGCGGUGcuuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 44552 0.67 0.622116
Target:  5'- -aGGUCGaCUGCUACGGcccgcAGGCGCccgacuGGGCg -3'
miRNA:   3'- agCUAGC-GGCGGUGCU-----UUCGCG------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 41756 0.67 0.622116
Target:  5'- cUCGcgCGCCggGCUAUGGGucuGCaCGAGCg -3'
miRNA:   3'- -AGCuaGCGG--CGGUGCUUu--CGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 45421 0.67 0.622116
Target:  5'- cUCGGUUucgGCgGCgGCGAcGGCgcauucGCGAGCa -3'
miRNA:   3'- -AGCUAG---CGgCGgUGCUuUCG------CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 20936 0.67 0.615528
Target:  5'- cCGA-CGCCcggcggcuacGCCACGGgccGgacgcaaacgcgcgcGGCGCGGGCg -3'
miRNA:   3'- aGCUaGCGG----------CGGUGCU---U---------------UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 2755 0.67 0.611138
Target:  5'- gCGccGUCGCCGCCGcCGAAA-C-CGAGUg -3'
miRNA:   3'- aGC--UAGCGGCGGU-GCUUUcGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 47482 0.67 0.611138
Target:  5'- gCGggCGgCGgCACGAucGCGCucaccGAGCa -3'
miRNA:   3'- aGCuaGCgGCgGUGCUuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 8947 0.67 0.611138
Target:  5'- cCGG-CGCUGuCCAuCGcguGCGCGGGCu -3'
miRNA:   3'- aGCUaGCGGC-GGU-GCuuuCGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.