miRNA display CGI


Results 21 - 40 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 5192 0.82 0.073743
Target:  5'- gUCGAgagCGCCGCCcgcucguccgccgGCGAGGGUGCGGGUu -3'
miRNA:   3'- -AGCUa--GCGGCGG-------------UGCUUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 5540 0.66 0.633103
Target:  5'- cCG-UgGCCgGCgACGGcuuGGCGCGAGUg -3'
miRNA:   3'- aGCuAgCGG-CGgUGCUu--UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 6020 0.66 0.64409
Target:  5'- gCGAggaCGCUGUUGCccucGGGCGUGAGCg -3'
miRNA:   3'- aGCUa--GCGGCGGUGcu--UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 6466 0.68 0.523625
Target:  5'- gUUGAUCgcgccguGCCGCC-CGAAGuugccgcccGCGuCGAGCa -3'
miRNA:   3'- -AGCUAG-------CGGCGGuGCUUU---------CGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 6551 0.7 0.433594
Target:  5'- cCGAcaaUCuGCCGCCagagcacgaGCGAgcGCGUGGGCc -3'
miRNA:   3'- aGCU---AG-CGGCGG---------UGCUuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 6589 0.75 0.224128
Target:  5'- cCGcAUCGCCGCCACG---GCGCGccgcccAGCg -3'
miRNA:   3'- aGC-UAGCGGCGGUGCuuuCGCGC------UCG- -5'
17040 3' -55.9 NC_004333.2 + 6640 0.68 0.524681
Target:  5'- cUCGAUCG-CGCU-CGgcAGCGCGcucGGCg -3'
miRNA:   3'- -AGCUAGCgGCGGuGCuuUCGCGC---UCG- -5'
17040 3' -55.9 NC_004333.2 + 6762 0.67 0.589244
Target:  5'- cCGGUCGCgCGCCuCGAGguAGC-CGAucGCa -3'
miRNA:   3'- aGCUAGCG-GCGGuGCUU--UCGcGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 7321 0.71 0.360853
Target:  5'- gCGAccaUCGCCGgCGaccaGAAGGCGCGcGCc -3'
miRNA:   3'- aGCU---AGCGGCgGUg---CUUUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 7368 0.66 0.676942
Target:  5'- cUUGAUCaGCU-CCAuCGAcGGgGCGAGCg -3'
miRNA:   3'- -AGCUAG-CGGcGGU-GCUuUCgCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 7477 0.66 0.684564
Target:  5'- aCGAUCGCgGCgAuCGGGuugguguucuuugcGGuCGCGAGUg -3'
miRNA:   3'- aGCUAGCGgCGgU-GCUU--------------UC-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 8143 0.69 0.462988
Target:  5'- gCGAggcguccgCGCCGUgGCGcc-GCGCGAGUu -3'
miRNA:   3'- aGCUa-------GCGGCGgUGCuuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 8377 0.66 0.633103
Target:  5'- gCGuUCGgaCgGCCAC---AGCGCGAGCg -3'
miRNA:   3'- aGCuAGC--GgCGGUGcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 8857 0.66 0.675852
Target:  5'- -aGcgCGCCGCCGcCGAGcgaaucggcugccAGCcccggGUGAGCa -3'
miRNA:   3'- agCuaGCGGCGGU-GCUU-------------UCG-----CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 8947 0.67 0.611138
Target:  5'- cCGG-CGCUGuCCAuCGcguGCGCGGGCu -3'
miRNA:   3'- aGCUaGCGGC-GGU-GCuuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 8951 0.73 0.297056
Target:  5'- gUCGAgcauugcaCGCagcucgGCCgACGGGAGCGCGGGCc -3'
miRNA:   3'- -AGCUa-------GCGg-----CGG-UGCUUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9274 0.67 0.622116
Target:  5'- gUUGGccgUGCCGaucagCGCGAAgcGGCGCGGGUg -3'
miRNA:   3'- -AGCUa--GCGGCg----GUGCUU--UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9350 0.66 0.655065
Target:  5'- cUCG-UCGUCGgCGCGc-GGCGuCGGGCc -3'
miRNA:   3'- -AGCuAGCGGCgGUGCuuUCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9445 0.72 0.319904
Target:  5'- cCGGuUCGCCGUCcuGCGcaccAGGCGCGGGUg -3'
miRNA:   3'- aGCU-AGCGGCGG--UGCu---UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9578 0.7 0.414612
Target:  5'- uUCG-UUGCCGCCACcuucAGCGCcAGCc -3'
miRNA:   3'- -AGCuAGCGGCGGUGcuu-UCGCGcUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.