miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 88 0.7 0.424039
Target:  5'- cCGGUUGCCGCCugcgccuCGucGGCacCGAGCa -3'
miRNA:   3'- aGCUAGCGGCGGu------GCuuUCGc-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 168 0.74 0.261828
Target:  5'- aCGAUCGgCGCCu----GGCGCGAGUc -3'
miRNA:   3'- aGCUAGCgGCGGugcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 700 0.73 0.28254
Target:  5'- gCGAUCguGCCGCCGCc----CGCGAGCg -3'
miRNA:   3'- aGCUAG--CGGCGGUGcuuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 1233 0.72 0.344045
Target:  5'- gCGcgCGCCGCCuuGGcugcGCGCGAGg -3'
miRNA:   3'- aGCuaGCGGCGGugCUuu--CGCGCUCg -5'
17040 3' -55.9 NC_004333.2 + 1276 0.69 0.453072
Target:  5'- -gGcgCGCCGCCugGc--GCGCGuuGCg -3'
miRNA:   3'- agCuaGCGGCGGugCuuuCGCGCu-CG- -5'
17040 3' -55.9 NC_004333.2 + 1965 0.66 0.666019
Target:  5'- uUCGAgCGCCuGgCGCuGAuccGGCGCGAGa -3'
miRNA:   3'- -AGCUaGCGG-CgGUG-CUu--UCGCGCUCg -5'
17040 3' -55.9 NC_004333.2 + 2413 0.69 0.453072
Target:  5'- cUGGUCGCCGUacaGCGgcAGCGUGccuugguacGGCg -3'
miRNA:   3'- aGCUAGCGGCGg--UGCuuUCGCGC---------UCG- -5'
17040 3' -55.9 NC_004333.2 + 2495 0.73 0.297056
Target:  5'- aUCGA-CGCUGCCuCGAGaucgGGCGCGAcGUa -3'
miRNA:   3'- -AGCUaGCGGCGGuGCUU----UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 2755 0.67 0.611138
Target:  5'- gCGccGUCGCCGCCGcCGAAA-C-CGAGUg -3'
miRNA:   3'- aGC--UAGCGGCGGU-GCUUUcGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 2771 0.67 0.593614
Target:  5'- cCGGUCGCguuCGUCACGAccgugaagcgguuGCGCaGGGCa -3'
miRNA:   3'- aGCUAGCG---GCGGUGCUuu-----------CGCG-CUCG- -5'
17040 3' -55.9 NC_004333.2 + 3005 0.69 0.503731
Target:  5'- cCGGcgCGuCCGCCGCGAcguAGCGCGcGa -3'
miRNA:   3'- aGCUa-GC-GGCGGUGCUu--UCGCGCuCg -5'
17040 3' -55.9 NC_004333.2 + 3062 0.75 0.218313
Target:  5'- gCGAUCGCCGCgCA-GAcAGGCGuCGAGUa -3'
miRNA:   3'- aGCUAGCGGCG-GUgCU-UUCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 3145 0.68 0.53528
Target:  5'- uUUGcgCGCCGCCAgCGccacGCGCggucGAGCg -3'
miRNA:   3'- -AGCuaGCGGCGGU-GCuuu-CGCG----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 3216 0.66 0.687823
Target:  5'- --aGUCgGCCGCCgACGu--GCGCGcGCa -3'
miRNA:   3'- agcUAG-CGGCGG-UGCuuuCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 3384 0.69 0.493393
Target:  5'- gUCGAccggCGUCGCCGuCGuc-GCGgGAGCu -3'
miRNA:   3'- -AGCUa---GCGGCGGU-GCuuuCGCgCUCG- -5'
17040 3' -55.9 NC_004333.2 + 4085 0.71 0.369469
Target:  5'- gCGAagUCGCCGCCcuuacCGAGcgGGCGCGAc- -3'
miRNA:   3'- aGCU--AGCGGCGGu----GCUU--UCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 4635 0.68 0.524681
Target:  5'- aUUGAgCGCCaUCGCGAucauGGCGaCGGGCa -3'
miRNA:   3'- -AGCUaGCGGcGGUGCUu---UCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 4718 0.69 0.473016
Target:  5'- uUCGAUUGCgGCgCGCaAgcGCGCGAuGCg -3'
miRNA:   3'- -AGCUAGCGgCG-GUGcUuuCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 4849 0.68 0.53528
Target:  5'- -aGAUgGCCGUCAUGAuuuccGGCGUcGGCu -3'
miRNA:   3'- agCUAgCGGCGGUGCUu----UCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 4869 0.69 0.473016
Target:  5'- cCGAUgccgcUGCCGCCGCuGAccauguAGCGCGcGCu -3'
miRNA:   3'- aGCUA-----GCGGCGGUG-CUu-----UCGCGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.