miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 27959 1.11 0.000573
Target:  5'- gUCGAUCGCCGCCACGAAAGCGCGAGCc -3'
miRNA:   3'- -AGCUAGCGGCGGUGCUUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9875 0.83 0.062208
Target:  5'- cCGGUCGCCGCgugCACGGucGCGCGuGCa -3'
miRNA:   3'- aGCUAGCGGCG---GUGCUuuCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 5192 0.82 0.073743
Target:  5'- gUCGAgagCGCCGCCcgcucguccgccgGCGAGGGUGCGGGUu -3'
miRNA:   3'- -AGCUa--GCGGCGG-------------UGCUUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 23426 0.81 0.087816
Target:  5'- gCGAUCGUCGCCGCGuu--CGUGAGCg -3'
miRNA:   3'- aGCUAGCGGCGGUGCuuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 29974 0.79 0.107107
Target:  5'- gCGGccgCGCUGCCAcCGGcgccGAGCGCGAGCa -3'
miRNA:   3'- aGCUa--GCGGCGGU-GCU----UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 43577 0.79 0.110169
Target:  5'- gUCGcgCGCuCGCCucgaacGCGAGuGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCG-GCGG------UGCUUuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 31326 0.78 0.130324
Target:  5'- gUCGAUCGCCuugGCCGCGAc-GCGCugcucGAGCg -3'
miRNA:   3'- -AGCUAGCGG---CGGUGCUuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 28758 0.76 0.171585
Target:  5'- gCGAgCGCCGCguCGAccGCGCGGGUc -3'
miRNA:   3'- aGCUaGCGGCGguGCUuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 29014 0.76 0.1763
Target:  5'- aUCGcgCGCgGCuagCACGAuaaccAGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCGgCG---GUGCUu----UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 32756 0.76 0.18113
Target:  5'- -aGGUCGCUGCCGcCGGccauAAGCGCG-GCa -3'
miRNA:   3'- agCUAGCGGCGGU-GCU----UUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 19302 0.76 0.191141
Target:  5'- gCGAUCGCgCGgCACGAgcgcuuGAGCGCGccGGCu -3'
miRNA:   3'- aGCUAGCG-GCgGUGCU------UUCGCGC--UCG- -5'
17040 3' -55.9 NC_004333.2 + 32349 0.76 0.191141
Target:  5'- -gGGUCGCUGCC-CGAuAGCGUGcGCa -3'
miRNA:   3'- agCUAGCGGCGGuGCUuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 28661 0.75 0.201099
Target:  5'- aCGAUUGCCcauacgGCCACGAGcgccgccAGCGCGccAGCg -3'
miRNA:   3'- aGCUAGCGG------CGGUGCUU-------UCGCGC--UCG- -5'
17040 3' -55.9 NC_004333.2 + 11873 0.75 0.201635
Target:  5'- cCGGUCgGCCGaaACG--GGCGCGAGCa -3'
miRNA:   3'- aGCUAG-CGGCggUGCuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 38989 0.75 0.212626
Target:  5'- gCGAUCgacacuGCCGUCGCGAAcgaacgcaAGCGCGcAGCu -3'
miRNA:   3'- aGCUAG------CGGCGGUGCUU--------UCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 3062 0.75 0.218313
Target:  5'- gCGAUCGCCGCgCA-GAcAGGCGuCGAGUa -3'
miRNA:   3'- aGCUAGCGGCG-GUgCU-UUCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 6589 0.75 0.224128
Target:  5'- cCGcAUCGCCGCCACG---GCGCGccgcccAGCg -3'
miRNA:   3'- aGC-UAGCGGCGGUGCuuuCGCGC------UCG- -5'
17040 3' -55.9 NC_004333.2 + 39195 0.74 0.255204
Target:  5'- gUCGGUCGCCGCCGCGcacGGcCGCa--- -3'
miRNA:   3'- -AGCUAGCGGCGGUGCuu-UC-GCGcucg -5'
17040 3' -55.9 NC_004333.2 + 168 0.74 0.261828
Target:  5'- aCGAUCGgCGCCu----GGCGCGAGUc -3'
miRNA:   3'- aGCUAGCgGCGGugcuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 39161 0.74 0.261828
Target:  5'- gCGAgcgCGCCGCCugGcAAGcCGCGAacGCc -3'
miRNA:   3'- aGCUa--GCGGCGGugCuUUC-GCGCU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.