Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17041 | 5' | -54.4 | NC_004333.2 | + | 47135 | 0.68 | 0.604206 |
Target: 5'- gGCCGgaugaCAUCGCGUUCGUCcccgaUGCGc -3' miRNA: 3'- gCGGCagua-GUGGCGUAAGCAG-----ACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 46348 | 0.66 | 0.74648 |
Target: 5'- gCGCCGUUAUgCGCCGCug-CGgauuugGCGc -3' miRNA: 3'- -GCGGCAGUA-GUGGCGuaaGCaga---CGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 45799 | 0.69 | 0.549324 |
Target: 5'- gCGCCGUCAUgggcuaCGCCGCGUcgaucaacuUCcagCUGCGc -3' miRNA: 3'- -GCGGCAGUA------GUGGCGUA---------AGca-GACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 45611 | 0.68 | 0.648597 |
Target: 5'- gGCCGUgAUUGCCGa--UCGUCUcGCa -3' miRNA: 3'- gCGGCAgUAGUGGCguaAGCAGA-CGc -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 42943 | 0.66 | 0.750672 |
Target: 5'- gGCCGgcuUCAUCGCCGaauaccccgaGUUUGCGa -3' miRNA: 3'- gCGGC---AGUAGUGGCguaag-----CAGACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 41288 | 0.68 | 0.615291 |
Target: 5'- aCGCCGcUGUCGCCGCGauccgcUCGauggCUGCGc -3' miRNA: 3'- -GCGGCaGUAGUGGCGUa-----AGCa---GACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 37388 | 0.67 | 0.681763 |
Target: 5'- gGCCGUCcUCAUCGUccuaCGUCgGCGc -3' miRNA: 3'- gCGGCAGuAGUGGCGuaa-GCAGaCGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 36600 | 0.67 | 0.670741 |
Target: 5'- aCGUCGacaAUCAgCGCAUguggcaaucgCGUCUGCGc -3' miRNA: 3'- -GCGGCag-UAGUgGCGUAa---------GCAGACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 36363 | 0.68 | 0.604206 |
Target: 5'- gCGCCGUCGcgcugaUgGCCGCGU-CGUacUUGCGc -3' miRNA: 3'- -GCGGCAGU------AgUGGCGUAaGCA--GACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 34644 | 0.66 | 0.725255 |
Target: 5'- cCGCCGgcggCAaCGCCGCGagcaCGUCggacgGCGa -3' miRNA: 3'- -GCGGCa---GUaGUGGCGUaa--GCAGa----CGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 34346 | 0.7 | 0.506558 |
Target: 5'- gCGcCCGUCGUCGaaccgUCGCcgUCG-CUGCGu -3' miRNA: 3'- -GC-GGCAGUAGU-----GGCGuaAGCaGACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 33329 | 0.67 | 0.680663 |
Target: 5'- cCGgCGUCAUUcugaucgGCaCGCcgUgGUCUGCGa -3' miRNA: 3'- -GCgGCAGUAG-------UG-GCGuaAgCAGACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 30680 | 0.66 | 0.725255 |
Target: 5'- aGCCGUUcgCGCCGCcgcCGgcgGCGg -3' miRNA: 3'- gCGGCAGuaGUGGCGuaaGCagaCGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 28762 | 0.66 | 0.714494 |
Target: 5'- gCGCCG-CGUCgACCGCGcggGUCgcgGCGg -3' miRNA: 3'- -GCGGCaGUAG-UGGCGUaagCAGa--CGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 27463 | 1.1 | 0.00104 |
Target: 5'- gCGCCGUCAUCACCGCAUUCGUCUGCGa -3' miRNA: 3'- -GCGGCAGUAGUGGCGUAAGCAGACGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 27227 | 0.79 | 0.140571 |
Target: 5'- uCGCCGUCGUgAUCGCAg-CGUCUGCc -3' miRNA: 3'- -GCGGCAGUAgUGGCGUaaGCAGACGc -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 26636 | 0.67 | 0.692736 |
Target: 5'- uCGuuGUCG-CACCGCcgcUCGUgaGCGu -3' miRNA: 3'- -GCggCAGUaGUGGCGua-AGCAgaCGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 23425 | 0.78 | 0.17541 |
Target: 5'- aGCgaUCGUCGCCGCGUUCGUgaGCGg -3' miRNA: 3'- gCGgcAGUAGUGGCGUAAGCAgaCGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 22576 | 0.67 | 0.703651 |
Target: 5'- cCGCCGUCGUCACgacaucggCGCucgugUUGUUcGCGu -3' miRNA: 3'- -GCGGCAGUAGUG--------GCGua---AGCAGaCGC- -5' |
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17041 | 5' | -54.4 | NC_004333.2 | + | 22499 | 0.66 | 0.73592 |
Target: 5'- gGCUGaUCAggUCGCCGCGUUCG-CgacgGCc -3' miRNA: 3'- gCGGC-AGU--AGUGGCGUAAGCaGa---CGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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