miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17045 5' -51.9 NC_004333.2 + 18042 0.66 0.83786
Target:  5'- gCGCUGA-UCGCGCUGcccgcugcuGCGCAGu---- -3'
miRNA:   3'- -GCGACUaAGCGCGGC---------UGCGUUucuuu -5'
17045 5' -51.9 NC_004333.2 + 26006 0.66 0.828524
Target:  5'- cCGCcGGc-CGcCGCCGGCGaCAAGGAGAa -3'
miRNA:   3'- -GCGaCUaaGC-GCGGCUGC-GUUUCUUU- -5'
17045 5' -51.9 NC_004333.2 + 15807 0.66 0.818962
Target:  5'- gCGUUcGA-UCGCGCCGACGCc------ -3'
miRNA:   3'- -GCGA-CUaAGCGCGGCUGCGuuucuuu -5'
17045 5' -51.9 NC_004333.2 + 10853 0.66 0.817994
Target:  5'- aCGCUGucaCGCGCuUGACGCcgcgcggGAAGAAc -3'
miRNA:   3'- -GCGACuaaGCGCG-GCUGCG-------UUUCUUu -5'
17045 5' -51.9 NC_004333.2 + 4220 0.66 0.809186
Target:  5'- aGCUG---CGCGuuGACGCucGAGAAc -3'
miRNA:   3'- gCGACuaaGCGCggCUGCGu-UUCUUu -5'
17045 5' -51.9 NC_004333.2 + 5488 0.67 0.799208
Target:  5'- cCGCUcg-UCG-GCCGGCGUGGAGAc- -3'
miRNA:   3'- -GCGAcuaAGCgCGGCUGCGUUUCUuu -5'
17045 5' -51.9 NC_004333.2 + 47491 0.67 0.799208
Target:  5'- gCGCUGAacgaggCGCcgGCCGGCGCGAc---- -3'
miRNA:   3'- -GCGACUaa----GCG--CGGCUGCGUUucuuu -5'
17045 5' -51.9 NC_004333.2 + 36716 0.67 0.768179
Target:  5'- gCGCUGAUUCGC-UCGAucuCGCAG-GAAu -3'
miRNA:   3'- -GCGACUAAGCGcGGCU---GCGUUuCUUu -5'
17045 5' -51.9 NC_004333.2 + 12039 0.67 0.757513
Target:  5'- gCGUUGAaggUUGCGCCGGuCGCGcAGGc- -3'
miRNA:   3'- -GCGACUa--AGCGCGGCU-GCGUuUCUuu -5'
17045 5' -51.9 NC_004333.2 + 28852 0.67 0.757513
Target:  5'- gGCUGcGUUCGUaGCCGGCGCGc----- -3'
miRNA:   3'- gCGAC-UAAGCG-CGGCUGCGUuucuuu -5'
17045 5' -51.9 NC_004333.2 + 10038 0.67 0.757513
Target:  5'- gGCcGggUCgGCGUCGaACGCGAAGAAc -3'
miRNA:   3'- gCGaCuaAG-CGCGGC-UGCGUUUCUUu -5'
17045 5' -51.9 NC_004333.2 + 21021 0.68 0.746707
Target:  5'- gGCUGAUcgCGCGCCGACa-------- -3'
miRNA:   3'- gCGACUAa-GCGCGGCUGcguuucuuu -5'
17045 5' -51.9 NC_004333.2 + 3245 0.68 0.7147
Target:  5'- aGCUGccgacuucuucggCGCGCgCGACGCAucGAGAc -3'
miRNA:   3'- gCGACuaa----------GCGCG-GCUGCGUuuCUUU- -5'
17045 5' -51.9 NC_004333.2 + 42496 0.68 0.702346
Target:  5'- gCGCUGA--UGCGCUGACGaucauCGAAGAc- -3'
miRNA:   3'- -GCGACUaaGCGCGGCUGC-----GUUUCUuu -5'
17045 5' -51.9 NC_004333.2 + 37901 0.68 0.691037
Target:  5'- uCGC-GAUUCGCGCucucggCGACGCAAAc--- -3'
miRNA:   3'- -GCGaCUAAGCGCG------GCUGCGUUUcuuu -5'
17045 5' -51.9 NC_004333.2 + 20633 0.69 0.679666
Target:  5'- gCGCaGAUUCGCcCCGGCGCGGc---- -3'
miRNA:   3'- -GCGaCUAAGCGcGGCUGCGUUucuuu -5'
17045 5' -51.9 NC_004333.2 + 32892 0.69 0.668246
Target:  5'- uGCUGAUgcugacCGCGCCGcCGCAGc---- -3'
miRNA:   3'- gCGACUAa-----GCGCGGCuGCGUUucuuu -5'
17045 5' -51.9 NC_004333.2 + 46011 0.69 0.633811
Target:  5'- gGCUGGcacggccUGCGCUGGCGUAAGGAu- -3'
miRNA:   3'- gCGACUaa-----GCGCGGCUGCGUUUCUuu -5'
17045 5' -51.9 NC_004333.2 + 20561 0.7 0.615419
Target:  5'- cCGCUGAUcgucggcgcgucgggUCGCGCCGugGUg------ -3'
miRNA:   3'- -GCGACUA---------------AGCGCGGCugCGuuucuuu -5'
17045 5' -51.9 NC_004333.2 + 8934 0.7 0.610826
Target:  5'- gGCUucGUUCGCGCCGGCGCu------ -3'
miRNA:   3'- gCGAc-UAAGCGCGGCUGCGuuucuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.