Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17052 | 3' | -62.1 | NC_004333.2 | + | 16544 | 0.66 | 0.382246 |
Target: 5'- aUCGGCCgacuguucacgcGCGcgGCcacAGCgGCCGaGAcGGCg -3' miRNA: 3'- -GGCCGG------------UGCuaCG---UCGgCGGC-CU-CCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 44389 | 0.66 | 0.373782 |
Target: 5'- cUCGGCgGCGcGUGCgcgguacaacGGCCuGCCGGGcucgcuGGCu -3' miRNA: 3'- -GGCCGgUGC-UACG----------UCGG-CGGCCU------CCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 37470 | 0.66 | 0.381394 |
Target: 5'- uCCGGCgcucgccaaACGcAUGCagaucgagcaaugGGCCGCCGGccacGGCc -3' miRNA: 3'- -GGCCGg--------UGC-UACG-------------UCGGCGGCCu---CCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 45592 | 0.66 | 0.382246 |
Target: 5'- cCCGGUCGCGAgaucGUgauGCCGgUCGGucGCa -3' miRNA: 3'- -GGCCGGUGCUa---CGu--CGGC-GGCCucCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 25729 | 0.66 | 0.333403 |
Target: 5'- gCCGGCCA-GcUGCAG--GCCGGucGGCg -3' miRNA: 3'- -GGCCGGUgCuACGUCggCGGCCu-CCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 18844 | 0.66 | 0.333403 |
Target: 5'- gCGGCagUACGcaguugccGUGCGcaacgcauuGCCGCCGG-GGCg -3' miRNA: 3'- gGCCG--GUGC--------UACGU---------CGGCGGCCuCCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 23671 | 0.66 | 0.340429 |
Target: 5'- gCCGGCCuccgGCGGcUGCaucguGGCCGgCGGAaaaccgagcgauuGGCu -3' miRNA: 3'- -GGCCGG----UGCU-ACG-----UCGGCgGCCU-------------CCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 23479 | 0.66 | 0.349163 |
Target: 5'- gUCGGCCGCGcUGaucCAGuuGCCGaGGaagucGGCa -3' miRNA: 3'- -GGCCGGUGCuAC---GUCggCGGC-CU-----CCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 45016 | 0.66 | 0.357239 |
Target: 5'- uCCGGCCGCucGAccgcGCGuGgCGCUGGcGGCg -3' miRNA: 3'- -GGCCGGUG--CUa---CGU-CgGCGGCCuCCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 24208 | 0.66 | 0.333403 |
Target: 5'- aCCGGCCGCc---UGGCCGCCGuaaaacGGCg -3' miRNA: 3'- -GGCCGGUGcuacGUCGGCGGCcu----CCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 32300 | 0.66 | 0.341217 |
Target: 5'- gCGGUCACG--GCGGCuCGCuCGcGGGCu -3' miRNA: 3'- gGCCGGUGCuaCGUCG-GCG-GCcUCCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 27837 | 0.66 | 0.341217 |
Target: 5'- gCCGGUCGCGGUacccGuCGGCacgGCCGGcaagccuGGCa -3' miRNA: 3'- -GGCCGGUGCUA----C-GUCGg--CGGCCu------CCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 45435 | 0.66 | 0.382246 |
Target: 5'- gCGGCCGCGAUcuCGGCUGUgacGGGCa -3' miRNA: 3'- gGCCGGUGCUAc-GUCGGCGgccUCCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 4866 | 0.66 | 0.379693 |
Target: 5'- uCCGGCgucggcucgaucggCACGAgcGCauAGCCgGCCGGGaucGGCg -3' miRNA: 3'- -GGCCG--------------GUGCUa-CG--UCGG-CGGCCU---CCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 19331 | 0.66 | 0.373782 |
Target: 5'- gCCGGCUACGAacGCAGCCgGCaCGauguguGGUu -3' miRNA: 3'- -GGCCGGUGCUa-CGUCGG-CG-GCcu----CCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 44258 | 0.66 | 0.365446 |
Target: 5'- gUCGGCCugcCGccGCuGCCGCCu--GGCg -3' miRNA: 3'- -GGCCGGu--GCuaCGuCGGCGGccuCCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 43146 | 0.66 | 0.364619 |
Target: 5'- gCCGGCCGCc---UGGCCGCCugucaagcgcgacGGaAGGCa -3' miRNA: 3'- -GGCCGGUGcuacGUCGGCGG-------------CC-UCCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 27642 | 0.66 | 0.357239 |
Target: 5'- gCGGCCAUGuuacaGGCCGCCagcgagcggcgcGGcGGCg -3' miRNA: 3'- gGCCGGUGCuacg-UCGGCGG------------CCuCCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 20967 | 0.66 | 0.356426 |
Target: 5'- aCGGCgauguaccgCGCGAaGCAcggucuGCCGCCacaccucGGGGGCa -3' miRNA: 3'- gGCCG---------GUGCUaCGU------CGGCGG-------CCUCCG- -5' |
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17052 | 3' | -62.1 | NC_004333.2 | + | 41831 | 0.66 | 0.354802 |
Target: 5'- aCCGGCgcaucguaaaaucgCGCGGUGCGGUCGUccucaCGGcuGCg -3' miRNA: 3'- -GGCCG--------------GUGCUACGUCGGCG-----GCCucCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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