miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17052 3' -62.1 NC_004333.2 + 24500 1.11 0.000145
Target:  5'- gCCGGCCACGAUGCAGCCGCCGGAGGCc -3'
miRNA:   3'- -GGCCGGUGCUACGUCGGCGGCCUCCG- -5'
17052 3' -62.1 NC_004333.2 + 27689 0.81 0.032041
Target:  5'- gCGGUUGCGcgGCAGCCGCCGGGacgcuaaccGGCu -3'
miRNA:   3'- gGCCGGUGCuaCGUCGGCGGCCU---------CCG- -5'
17052 3' -62.1 NC_004333.2 + 3417 0.77 0.057716
Target:  5'- aCGGCCAaGAUGCcGCCGUCGGucAGGUa -3'
miRNA:   3'- gGCCGGUgCUACGuCGGCGGCC--UCCG- -5'
17052 3' -62.1 NC_004333.2 + 34262 0.77 0.060845
Target:  5'- gCGGCCACGAUcgccacgGCAGCCGCCGc--GCa -3'
miRNA:   3'- gGCCGGUGCUA-------CGUCGGCGGCcucCG- -5'
17052 3' -62.1 NC_004333.2 + 687 0.77 0.062558
Target:  5'- gCCGGCCggcgccucguucaGCGcgGCAGUCGCCGccGGCg -3'
miRNA:   3'- -GGCCGG-------------UGCuaCGUCGGCGGCcuCCG- -5'
17052 3' -62.1 NC_004333.2 + 13902 0.76 0.072041
Target:  5'- aCgGGCUGCGcgGCGGCUGCCGu-GGCg -3'
miRNA:   3'- -GgCCGGUGCuaCGUCGGCGGCcuCCG- -5'
17052 3' -62.1 NC_004333.2 + 27234 0.75 0.082669
Target:  5'- uCCGGCCcCGuggcGUAGCCGCCGGgcgucGGGUu -3'
miRNA:   3'- -GGCCGGuGCua--CGUCGGCGGCC-----UCCG- -5'
17052 3' -62.1 NC_004333.2 + 28966 0.73 0.110939
Target:  5'- gCGGUCgaacgcgGCGAUcaguugcGCGGCCGCCGGGucGGCg -3'
miRNA:   3'- gGCCGG-------UGCUA-------CGUCGGCGGCCU--CCG- -5'
17052 3' -62.1 NC_004333.2 + 13042 0.73 0.11459
Target:  5'- aCCGGCCuucaaACGcgGCaugcucauuGGCUGCCGGuaauGGCg -3'
miRNA:   3'- -GGCCGG-----UGCuaCG---------UCGGCGGCCu---CCG- -5'
17052 3' -62.1 NC_004333.2 + 25403 0.73 0.11459
Target:  5'- uCCGGCgagCGCGccUGCAGCgUGCCGGcGGCg -3'
miRNA:   3'- -GGCCG---GUGCu-ACGUCG-GCGGCCuCCG- -5'
17052 3' -62.1 NC_004333.2 + 9618 0.73 0.120924
Target:  5'- gCCGGUUGCGcacCGGCUGCCGGcGGCg -3'
miRNA:   3'- -GGCCGGUGCuacGUCGGCGGCCuCCG- -5'
17052 3' -62.1 NC_004333.2 + 42290 0.73 0.120924
Target:  5'- aCCGGCCGCaa-GguGCCGaCC-GAGGCg -3'
miRNA:   3'- -GGCCGGUGcuaCguCGGC-GGcCUCCG- -5'
17052 3' -62.1 NC_004333.2 + 15918 0.73 0.124212
Target:  5'- aCCGcCCACGGUGCcaucGCCGCCacaaucGGGGCa -3'
miRNA:   3'- -GGCcGGUGCUACGu---CGGCGGc-----CUCCG- -5'
17052 3' -62.1 NC_004333.2 + 1059 0.72 0.134221
Target:  5'- uCCGGCCAgGAUGCgcgauccggguaaGGCUcaGUCGGAgcGGCg -3'
miRNA:   3'- -GGCCGGUgCUACG-------------UCGG--CGGCCU--CCG- -5'
17052 3' -62.1 NC_004333.2 + 14170 0.72 0.134579
Target:  5'- aCCGGCC-CGAUGCcgGGUCGCUcgucgGGAugcGGCa -3'
miRNA:   3'- -GGCCGGuGCUACG--UCGGCGG-----CCU---CCG- -5'
17052 3' -62.1 NC_004333.2 + 18537 0.72 0.138208
Target:  5'- gCCGGCgGCaacccgGGUGCGGCaGCCGGcgcGGCg -3'
miRNA:   3'- -GGCCGgUG------CUACGUCGgCGGCCu--CCG- -5'
17052 3' -62.1 NC_004333.2 + 12422 0.72 0.14344
Target:  5'- uUCGGCaCGCGGUaucugcucugcuaugGCAcGCCGCCGGAuGCc -3'
miRNA:   3'- -GGCCG-GUGCUA---------------CGU-CGGCGGCCUcCG- -5'
17052 3' -62.1 NC_004333.2 + 29659 0.71 0.153234
Target:  5'- gCCGGCUGCGAaggccgcUGCAGCguccgucggcgUGCCGGcaacGGCg -3'
miRNA:   3'- -GGCCGGUGCU-------ACGUCG-----------GCGGCCu---CCG- -5'
17052 3' -62.1 NC_004333.2 + 38708 0.71 0.157733
Target:  5'- cUCGGCgGCGGUGCGGCacccgCGCCuggugcgcaGGAcGGCg -3'
miRNA:   3'- -GGCCGgUGCUACGUCG-----GCGG---------CCU-CCG- -5'
17052 3' -62.1 NC_004333.2 + 22770 0.71 0.157733
Target:  5'- gCCGG-CACGcUGCAGgcgcgcUCGCCGGAuGGCu -3'
miRNA:   3'- -GGCCgGUGCuACGUC------GGCGGCCU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.