miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17058 3' -46.9 NC_004333.2 + 2346 0.8 0.391247
Target:  5'- -cCGUGCGGccguugcgcagcUGGAAGUugAUCGACGCg -3'
miRNA:   3'- auGUAUGCU------------ACCUUCGugUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 2483 0.74 0.695192
Target:  5'- gGCGUGCGuuGUGGuAGCugAUC-GCGCg -3'
miRNA:   3'- aUGUAUGC--UACCuUCGugUAGuUGCG- -5'
17058 3' -46.9 NC_004333.2 + 5674 0.75 0.636057
Target:  5'- cGCGUcuuCGAUGaucgucAGCGCAUCAGCGCg -3'
miRNA:   3'- aUGUAu--GCUACcu----UCGUGUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 7116 0.68 0.951393
Target:  5'- cACGUGCGGauUGGcGGCGCgaaacguGUCGACGa -3'
miRNA:   3'- aUGUAUGCU--ACCuUCGUG-------UAGUUGCg -5'
17058 3' -46.9 NC_004333.2 + 7272 0.66 0.984877
Target:  5'- gUGCAUGCGAUcuuucauGCGCAagcCGGCGCa -3'
miRNA:   3'- -AUGUAUGCUAccuu---CGUGUa--GUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 10707 0.74 0.706861
Target:  5'- cUGCAUGCGuuUGGcGAGCGCcggaauGUCGGCGCc -3'
miRNA:   3'- -AUGUAUGCu-ACC-UUCGUG------UAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 11346 0.72 0.806307
Target:  5'- gGCcgGCGAUGGccguAGCGCGcacUCGACGg -3'
miRNA:   3'- aUGuaUGCUACCu---UCGUGU---AGUUGCg -5'
17058 3' -46.9 NC_004333.2 + 12079 0.74 0.695192
Target:  5'- uUGCGUACG-UGGcuGGCGCG-CAGCGCc -3'
miRNA:   3'- -AUGUAUGCuACCu-UCGUGUaGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 12357 0.74 0.706861
Target:  5'- cGCG-ACGGUcGGggGCGCcgUAGCGCc -3'
miRNA:   3'- aUGUaUGCUA-CCuuCGUGuaGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 13015 0.66 0.987545
Target:  5'- cUGCcgGCGAUGGcGGUGCGauguuuuaccggccuUCAaACGCg -3'
miRNA:   3'- -AUGuaUGCUACCuUCGUGU---------------AGU-UGCG- -5'
17058 3' -46.9 NC_004333.2 + 14061 0.72 0.817482
Target:  5'- aGCA-GCGAUGGggGUGCGcaggcaaagcugaugCAGCGCg -3'
miRNA:   3'- aUGUaUGCUACCuuCGUGUa--------------GUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 14848 0.66 0.984877
Target:  5'- gGCGUGcCGAUcagaaugacgccGGAgagcugcugcaGGCGCGUCAGCaGCa -3'
miRNA:   3'- aUGUAU-GCUA------------CCU-----------UCGUGUAGUUG-CG- -5'
17058 3' -46.9 NC_004333.2 + 15501 0.67 0.974856
Target:  5'- cUGCucgcgGCGGUcaccGGcGGCGCGUCAaGCGCg -3'
miRNA:   3'- -AUGua---UGCUA----CCuUCGUGUAGU-UGCG- -5'
17058 3' -46.9 NC_004333.2 + 16050 0.67 0.971731
Target:  5'- aUGCAUGCGAgUGuAAcGCAauCGUCAAUGCa -3'
miRNA:   3'- -AUGUAUGCU-ACcUU-CGU--GUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 17148 0.69 0.930456
Target:  5'- cGCAUGCGcgaGGAAgucguGCGCGUCGACa- -3'
miRNA:   3'- aUGUAUGCua-CCUU-----CGUGUAGUUGcg -5'
17058 3' -46.9 NC_004333.2 + 17251 0.73 0.773489
Target:  5'- gACGUgaucgucGCGAUGaAGGCaaGCGUCGACGCg -3'
miRNA:   3'- aUGUA-------UGCUACcUUCG--UGUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 18072 0.81 0.335575
Target:  5'- cAguUGCGcgGGucGCGCAUCGACGCg -3'
miRNA:   3'- aUguAUGCuaCCuuCGUGUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 19487 0.66 0.986823
Target:  5'- -cUAUGCGAUcGGcgcuGGCGCGcuggCGGCGCu -3'
miRNA:   3'- auGUAUGCUA-CCu---UCGUGUa---GUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 19550 0.66 0.98034
Target:  5'- gAUggGCGccGGucGCACGgUCGGCGCg -3'
miRNA:   3'- aUGuaUGCuaCCuuCGUGU-AGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 19636 0.79 0.431559
Target:  5'- cACGUGCGAUgccgGGAAuGCACgcGUCGGCGCg -3'
miRNA:   3'- aUGUAUGCUA----CCUU-CGUG--UAGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.