miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17058 3' -46.9 NC_004333.2 + 2346 0.8 0.391247
Target:  5'- -cCGUGCGGccguugcgcagcUGGAAGUugAUCGACGCg -3'
miRNA:   3'- auGUAUGCU------------ACCUUCGugUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 44697 0.66 0.984877
Target:  5'- cACAgGCGAUGGAGGacuugaagGCGUUcgccgaGGCGCa -3'
miRNA:   3'- aUGUaUGCUACCUUCg-------UGUAG------UUGCG- -5'
17058 3' -46.9 NC_004333.2 + 19487 0.66 0.986823
Target:  5'- -cUAUGCGAUcGGcgcuGGCGCGcuggCGGCGCu -3'
miRNA:   3'- auGUAUGCUA-CCu---UCGUGUa---GUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 27877 0.66 0.986823
Target:  5'- cUGCGUuCGAguacGGcGGCAucacuucggcCAUCAGCGCg -3'
miRNA:   3'- -AUGUAuGCUa---CCuUCGU----------GUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 14061 0.72 0.817482
Target:  5'- aGCA-GCGAUGGggGUGCGcaggcaaagcugaugCAGCGCg -3'
miRNA:   3'- aUGUaUGCUACCuuCGUGUa--------------GUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 38745 0.71 0.845579
Target:  5'- cGCAUgACGAUGGAAGCggccacgagcgGCAUCGcCGa -3'
miRNA:   3'- aUGUA-UGCUACCUUCG-----------UGUAGUuGCg -5'
17058 3' -46.9 NC_004333.2 + 48153 0.7 0.903907
Target:  5'- aACGaACGuAUGuGAGGCGCGagAACGCg -3'
miRNA:   3'- aUGUaUGC-UAC-CUUCGUGUagUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 17148 0.69 0.930456
Target:  5'- cGCAUGCGcgaGGAAgucguGCGCGUCGACa- -3'
miRNA:   3'- aUGUAUGCua-CCUU-----CGUGUAGUUGcg -5'
17058 3' -46.9 NC_004333.2 + 47978 0.67 0.971731
Target:  5'- cAUcgGCGGUGuGcGGCugugcuACAUCGGCGCg -3'
miRNA:   3'- aUGuaUGCUAC-CuUCG------UGUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 36412 0.66 0.98272
Target:  5'- aUGCGUGCGAgUGuAAcGCAauCGUCAAUGCa -3'
miRNA:   3'- -AUGUAUGCU-ACcUU-CGU--GUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 21205 0.66 0.977722
Target:  5'- uUACGUGCGcaucaAUGGGcGGC-CGUCGcGCGCa -3'
miRNA:   3'- -AUGUAUGC-----UACCU-UCGuGUAGU-UGCG- -5'
17058 3' -46.9 NC_004333.2 + 16050 0.67 0.971731
Target:  5'- aUGCAUGCGAgUGuAAcGCAauCGUCAAUGCa -3'
miRNA:   3'- -AUGUAUGCU-ACcUU-CGU--GUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 30889 0.75 0.624165
Target:  5'- cGCAU-CGAcUGGuugaacgcgucGAGCGCGUCGACGCu -3'
miRNA:   3'- aUGUAuGCU-ACC-----------UUCGUGUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 27503 0.66 0.977722
Target:  5'- uUGCGUGCGGUuGAuguaAGCG-AUCGACGUg -3'
miRNA:   3'- -AUGUAUGCUAcCU----UCGUgUAGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 39480 0.74 0.695192
Target:  5'- gGCGaa-GAUGGAAGCGCG-CGGCGUa -3'
miRNA:   3'- aUGUaugCUACCUUCGUGUaGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 40865 0.69 0.930456
Target:  5'- cGCcgGCGAUGGucGCGCGacUCGguaucuacuGCGCc -3'
miRNA:   3'- aUGuaUGCUACCuuCGUGU--AGU---------UGCG- -5'
17058 3' -46.9 NC_004333.2 + 19550 0.66 0.98034
Target:  5'- gAUggGCGccGGucGCACGgUCGGCGCg -3'
miRNA:   3'- aUGuaUGCuaCCuuCGUGU-AGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 14848 0.66 0.984877
Target:  5'- gGCGUGcCGAUcagaaugacgccGGAgagcugcugcaGGCGCGUCAGCaGCa -3'
miRNA:   3'- aUGUAU-GCUA------------CCU-----------UCGUGUAGUUG-CG- -5'
17058 3' -46.9 NC_004333.2 + 12357 0.74 0.706861
Target:  5'- cGCG-ACGGUcGGggGCGCcgUAGCGCc -3'
miRNA:   3'- aUGUaUGCUA-CCuuCGUGuaGUUGCG- -5'
17058 3' -46.9 NC_004333.2 + 37805 0.71 0.854772
Target:  5'- aGCGgcGCGAUGcGAAGCGCGUCG-CGa -3'
miRNA:   3'- aUGUa-UGCUAC-CUUCGUGUAGUuGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.