miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 8951 0.67 0.510026
Target:  5'- cGCUGUCcaucgcgugcgcggGCUGGaucgugggccguGCGCGgCGGCGaCCGAc -3'
miRNA:   3'- -CGGCAG--------------UGACU------------UGCGCgGCUGC-GGCU- -5'
17070 3' -58 NC_004333.2 + 17695 0.67 0.502875
Target:  5'- gGCCacggCACcGGGCGCgGCCGGCGUCu- -3'
miRNA:   3'- -CGGca--GUGaCUUGCG-CGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 19793 0.67 0.502875
Target:  5'- cGCCGUC-UUGcACGCcaCCaGCGCCGAg -3'
miRNA:   3'- -CGGCAGuGACuUGCGc-GGcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 2673 0.67 0.502875
Target:  5'- cGCCGgcaGCUugcagcguCGCGCCGGCGgCGGc -3'
miRNA:   3'- -CGGCag-UGAcuu-----GCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 3291 0.67 0.492736
Target:  5'- cGgCGUCAUcgGGGCGgGCgGcGCGCCGGg -3'
miRNA:   3'- -CgGCAGUGa-CUUGCgCGgC-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 25280 0.67 0.492736
Target:  5'- -gCGUCGCgg---GCGUCGACGUCGAg -3'
miRNA:   3'- cgGCAGUGacuugCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 30680 0.67 0.492736
Target:  5'- aGCCGUU------CGCGCCGcCGCCGGc -3'
miRNA:   3'- -CGGCAGugacuuGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 37433 0.67 0.492736
Target:  5'- uGCaCGUgUACUGcGGCGUGacgaaCGGCGCCGAc -3'
miRNA:   3'- -CG-GCA-GUGAC-UUGCGCg----GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 9019 0.67 0.482692
Target:  5'- cCCGcgCACgcgaUGGACaGCGCCGGCGCgaaCGAa -3'
miRNA:   3'- cGGCa-GUG----ACUUG-CGCGGCUGCG---GCU- -5'
17070 3' -58 NC_004333.2 + 41393 0.67 0.481694
Target:  5'- cGCgCGUCACguccaucGCGCGCCGGgcgagcucggccuCGUCGAa -3'
miRNA:   3'- -CG-GCAGUGacu----UGCGCGGCU-------------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 9421 0.67 0.472748
Target:  5'- cCCGaCGCc--GCGCGCCGACGaCGAg -3'
miRNA:   3'- cGGCaGUGacuUGCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 18783 0.67 0.472748
Target:  5'- cGCCaUCGCUGAAcCGCGCUuauCGCgCGGc -3'
miRNA:   3'- -CGGcAGUGACUU-GCGCGGcu-GCG-GCU- -5'
17070 3' -58 NC_004333.2 + 12747 0.67 0.472748
Target:  5'- aGuuGUCGCUGuucgGCGCgGUCGAccCGUCGAu -3'
miRNA:   3'- -CggCAGUGACu---UGCG-CGGCU--GCGGCU- -5'
17070 3' -58 NC_004333.2 + 30841 0.67 0.472748
Target:  5'- -gCGUCGuaGAACGCGUCGAgCGCCu- -3'
miRNA:   3'- cgGCAGUgaCUUGCGCGGCU-GCGGcu -5'
17070 3' -58 NC_004333.2 + 27676 0.67 0.47176
Target:  5'- aGUCGcgCAcCUGAACGCGCUgcagcgaGACGUCGu -3'
miRNA:   3'- -CGGCa-GU-GACUUGCGCGG-------CUGCGGCu -5'
17070 3' -58 NC_004333.2 + 32320 0.68 0.462909
Target:  5'- gGUCgGUCAC-GAGCGCGUgcaCGGCuGCCGGg -3'
miRNA:   3'- -CGG-CAGUGaCUUGCGCG---GCUG-CGGCU- -5'
17070 3' -58 NC_004333.2 + 45030 0.68 0.462909
Target:  5'- cGCgCGUggCGCUGGcgGCGCGCaaACGCUGAa -3'
miRNA:   3'- -CG-GCA--GUGACU--UGCGCGgcUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 23221 0.68 0.462909
Target:  5'- cGCCGUCuugaucacgGCggcGAACGCGCCGGuCGUg-- -3'
miRNA:   3'- -CGGCAG---------UGa--CUUGCGCGGCU-GCGgcu -5'
17070 3' -58 NC_004333.2 + 32255 0.68 0.459978
Target:  5'- cGUCGUC-CUGAaccucggcgaguaaGCGCgugGCCGGCcuGCCGAc -3'
miRNA:   3'- -CGGCAGuGACU--------------UGCG---CGGCUG--CGGCU- -5'
17070 3' -58 NC_004333.2 + 46321 0.68 0.453178
Target:  5'- cUCGUCgaagaucgACUGAACGaGCgGGCGCCGu -3'
miRNA:   3'- cGGCAG--------UGACUUGCgCGgCUGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.