miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 32168 1.1 0.000459
Target:  5'- uGCCGUCACUGAACGCGCCGACGCCGAu -3'
miRNA:   3'- -CGGCAGUGACUUGCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 37187 0.8 0.07463
Target:  5'- cGCCGcUCACgacGCGCGCCGGUGCCGAg -3'
miRNA:   3'- -CGGC-AGUGacuUGCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 13853 0.79 0.083516
Target:  5'- cGCCGcgucgagcgCAUUGAGCGCGCCG-CGCCGc -3'
miRNA:   3'- -CGGCa--------GUGACUUGCGCGGCuGCGGCu -5'
17070 3' -58 NC_004333.2 + 7781 0.78 0.10733
Target:  5'- uCCGUCGCUGucCGCGCCGAucaccgcuacgaCGCCGu -3'
miRNA:   3'- cGGCAGUGACuuGCGCGGCU------------GCGGCu -5'
17070 3' -58 NC_004333.2 + 31301 0.77 0.11034
Target:  5'- gGCCG-CACc---UGCGCCGACGCCGAg -3'
miRNA:   3'- -CGGCaGUGacuuGCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 22075 0.77 0.113429
Target:  5'- cCCGcgCGCUGAuuCGCGCCGACGCaaaGAa -3'
miRNA:   3'- cGGCa-GUGACUu-GCGCGGCUGCGg--CU- -5'
17070 3' -58 NC_004333.2 + 38374 0.77 0.113429
Target:  5'- cGCUGUCGCgugucGggUGCGCCGgcgugACGCCGGc -3'
miRNA:   3'- -CGGCAGUGa----CuuGCGCGGC-----UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 660 0.77 0.116598
Target:  5'- -aCGUUACUGAugGCGCCauUGCCGAu -3'
miRNA:   3'- cgGCAGUGACUugCGCGGcuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 47721 0.76 0.130118
Target:  5'- cGCCGgCACgucGCGCGCCGugGCCu- -3'
miRNA:   3'- -CGGCaGUGacuUGCGCGGCugCGGcu -5'
17070 3' -58 NC_004333.2 + 25672 0.76 0.130118
Target:  5'- gGCCGUCGC-GAACGCGgCGAC-CUGAu -3'
miRNA:   3'- -CGGCAGUGaCUUGCGCgGCUGcGGCU- -5'
17070 3' -58 NC_004333.2 + 8725 0.76 0.14468
Target:  5'- aCCGUCAC-GAGCaagccggGCGCCG-CGCCGAg -3'
miRNA:   3'- cGGCAGUGaCUUG-------CGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 27228 0.76 0.149049
Target:  5'- cGCCGUCGugaucgcagcguCUGccUGCGCCGACGCCu- -3'
miRNA:   3'- -CGGCAGU------------GACuuGCGCGGCUGCGGcu -5'
17070 3' -58 NC_004333.2 + 23557 0.75 0.154784
Target:  5'- aGCUGUCGC-GAACGCauugucgaaagcgaaGCCGcCGCCGAg -3'
miRNA:   3'- -CGGCAGUGaCUUGCG---------------CGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 14998 0.75 0.161581
Target:  5'- aGCCGguuaGC-GGGC-CGCCGACGCCGAc -3'
miRNA:   3'- -CGGCag--UGaCUUGcGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 30083 0.75 0.161581
Target:  5'- uGCCGUagCGCcgacgGAACGCGUCGAUGCgCGAc -3'
miRNA:   3'- -CGGCA--GUGa----CUUGCGCGGCUGCG-GCU- -5'
17070 3' -58 NC_004333.2 + 5141 0.75 0.165965
Target:  5'- uGCUGaCGCUGuucagcgcCGCGCCGACGUCGGc -3'
miRNA:   3'- -CGGCaGUGACuu------GCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 14921 0.75 0.170455
Target:  5'- aGCCGUC-CUGGACGacCGCCGagaGCGCCu- -3'
miRNA:   3'- -CGGCAGuGACUUGC--GCGGC---UGCGGcu -5'
17070 3' -58 NC_004333.2 + 25435 0.75 0.175054
Target:  5'- gGCCGUCACgccGGGCGUGCCGguuACGaCGAc -3'
miRNA:   3'- -CGGCAGUGa--CUUGCGCGGC---UGCgGCU- -5'
17070 3' -58 NC_004333.2 + 47487 0.74 0.179762
Target:  5'- uGCCG-CGCUGAACgagGCGCCGGCcgGCgCGAc -3'
miRNA:   3'- -CGGCaGUGACUUG---CGCGGCUG--CG-GCU- -5'
17070 3' -58 NC_004333.2 + 14325 0.74 0.189518
Target:  5'- uGCCGcCGCUGGcucgaaagagGCGCGCgCGcACGCCGu -3'
miRNA:   3'- -CGGCaGUGACU----------UGCGCG-GC-UGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.