miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17070 3' -58 NC_004333.2 + 261 0.72 0.243017
Target:  5'- aGCCGgcgggcgcacgggCAgUGGAcuCGCGCCaGGCGCCGAu -3'
miRNA:   3'- -CGGCa------------GUgACUU--GCGCGG-CUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 660 0.77 0.116598
Target:  5'- -aCGUUACUGAugGCGCCauUGCCGAu -3'
miRNA:   3'- cgGCAGUGACUugCGCGGcuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 784 0.72 0.251794
Target:  5'- aGCCcuUCGaccUUGAGCGUGCCGGuCGCCGGc -3'
miRNA:   3'- -CGGc-AGU---GACUUGCGCGGCU-GCGGCU- -5'
17070 3' -58 NC_004333.2 + 1636 0.66 0.565391
Target:  5'- cGUCGUCGgcggcguagccCUGAAUGCGCUG-CGCgGu -3'
miRNA:   3'- -CGGCAGU-----------GACUUGCGCGGCuGCGgCu -5'
17070 3' -58 NC_004333.2 + 2482 0.72 0.270805
Target:  5'- cGCUGcCGCUGuACGgcgaccaggcgacCGCCGGCGCCGu -3'
miRNA:   3'- -CGGCaGUGACuUGC-------------GCGGCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 2673 0.67 0.502875
Target:  5'- cGCCGgcaGCUugcagcguCGCGCCGGCGgCGGc -3'
miRNA:   3'- -CGGCag-UGAcuu-----GCGCGGCUGCgGCU- -5'
17070 3' -58 NC_004333.2 + 3073 0.73 0.227392
Target:  5'- -aCGUCGCggcGGACGCGCCGGCGagCGu -3'
miRNA:   3'- cgGCAGUGa--CUUGCGCGGCUGCg-GCu -5'
17070 3' -58 NC_004333.2 + 3200 0.66 0.533808
Target:  5'- gGCCGgugaGCcGGcccgGCGCGCCGcccgccccgaugACGCCGGg -3'
miRNA:   3'- -CGGCag--UGaCU----UGCGCGGC------------UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 3291 0.67 0.492736
Target:  5'- cGgCGUCAUcgGGGCGgGCgGcGCGCCGGg -3'
miRNA:   3'- -CgGCAGUGa-CUUGCgCGgC-UGCGGCU- -5'
17070 3' -58 NC_004333.2 + 3792 0.66 0.586716
Target:  5'- gGCCuUCGCgaucuGCGCaGCgGACGCUGGa -3'
miRNA:   3'- -CGGcAGUGacu--UGCG-CGgCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 3842 0.66 0.586716
Target:  5'- gGCCGaUCA--GAACGCcacGUCGACGCUGu -3'
miRNA:   3'- -CGGC-AGUgaCUUGCG---CGGCUGCGGCu -5'
17070 3' -58 NC_004333.2 + 4600 0.67 0.513104
Target:  5'- aCCGUCAUgaUGAcgAUGgGCuaCGAUGCCGAg -3'
miRNA:   3'- cGGCAGUG--ACU--UGCgCG--GCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 4841 0.69 0.371022
Target:  5'- --aGUCgGCUGAccguacgcGCGCGCCG-UGCCGAu -3'
miRNA:   3'- cggCAG-UGACU--------UGCGCGGCuGCGGCU- -5'
17070 3' -58 NC_004333.2 + 4879 0.73 0.204488
Target:  5'- uGCCGcCGCUGAccauguagcGCGCGCUGcgauaguGCGCCGu -3'
miRNA:   3'- -CGGCaGUGACU---------UGCGCGGC-------UGCGGCu -5'
17070 3' -58 NC_004333.2 + 5141 0.75 0.165965
Target:  5'- uGCUGaCGCUGuucagcgcCGCGCCGACGUCGGc -3'
miRNA:   3'- -CGGCaGUGACuu------GCGCGGCUGCGGCU- -5'
17070 3' -58 NC_004333.2 + 6595 0.73 0.205022
Target:  5'- cGCCGcCACg--GCGCGCCGcccaGCGCCGc -3'
miRNA:   3'- -CGGCaGUGacuUGCGCGGC----UGCGGCu -5'
17070 3' -58 NC_004333.2 + 6671 0.72 0.271481
Target:  5'- uGCgG-CGCUGGgcgGCGCGCCGugGCggCGAu -3'
miRNA:   3'- -CGgCaGUGACU---UGCGCGGCugCG--GCU- -5'
17070 3' -58 NC_004333.2 + 6729 0.71 0.299628
Target:  5'- cGCCu--GCUcGAGCGCGCCGAgcgcgcUGCCGAg -3'
miRNA:   3'- -CGGcagUGA-CUUGCGCGGCU------GCGGCU- -5'
17070 3' -58 NC_004333.2 + 6782 0.69 0.406275
Target:  5'- aGCCGaUCGCauacGAcaGCGCGCCGAucuuCGCCu- -3'
miRNA:   3'- -CGGC-AGUGa---CU--UGCGCGGCU----GCGGcu -5'
17070 3' -58 NC_004333.2 + 7504 0.68 0.434056
Target:  5'- gGCCGUCucgugcagcuCUGG--GCGCCGcGCGUCGAa -3'
miRNA:   3'- -CGGCAGu---------GACUugCGCGGC-UGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.