miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17075 3' -61.1 NC_004333.2 + 35114 1.06 0.000343
Target:  5'- cAACCCGCAGGACAGCGCGUCACGCCGa -3'
miRNA:   3'- -UUGGGCGUCCUGUCGCGCAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 9481 0.78 0.053291
Target:  5'- cAGCCCGCAGGGCAGCGaagacgacgaaaugcCGg-GCGCCGa -3'
miRNA:   3'- -UUGGGCGUCCUGUCGC---------------GCagUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 25414 0.77 0.059031
Target:  5'- cGCCUGCAGcgugccGGCGGCGgcCGUCACGCCGg -3'
miRNA:   3'- uUGGGCGUC------CUGUCGC--GCAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 23379 0.77 0.064268
Target:  5'- cGCCCGuCAguccGGACAGgGCgGUCACGCCGu -3'
miRNA:   3'- uUGGGC-GU----CCUGUCgCG-CAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 47589 0.74 0.109348
Target:  5'- gGACCCGCAGGcguucauucaGCuGCGCGU--CGCCGa -3'
miRNA:   3'- -UUGGGCGUCC----------UGuCGCGCAguGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 33406 0.72 0.151682
Target:  5'- uGCCUGCGGcGCAGCGacugCGCGCCGa -3'
miRNA:   3'- uUGGGCGUCcUGUCGCgca-GUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 3295 0.71 0.178037
Target:  5'- uGCCCgGCGucaucggggcGGGCGGCGCGcCGgGCCGg -3'
miRNA:   3'- uUGGG-CGU----------CCUGUCGCGCaGUgCGGC- -5'
17075 3' -61.1 NC_004333.2 + 46189 0.71 0.178037
Target:  5'- --aCCG-AGGGCugGGCGCGUCucGCGCCGg -3'
miRNA:   3'- uugGGCgUCCUG--UCGCGCAG--UGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 2666 0.71 0.178037
Target:  5'- --gCCGCAacgccGGCAGCuugcaGCGUCGCGCCGg -3'
miRNA:   3'- uugGGCGUc----CUGUCG-----CGCAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 27481 0.7 0.189674
Target:  5'- cGCCgCGCAGGguuacggcaaacaugACGGCacggcCGUCGCGCCGg -3'
miRNA:   3'- uUGG-GCGUCC---------------UGUCGc----GCAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 682 0.7 0.192686
Target:  5'- uGCCCGUgcucGGugAGCGCGaUCGUGCCGc -3'
miRNA:   3'- uUGGGCGu---CCugUCGCGC-AGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 26649 0.7 0.192686
Target:  5'- --gCCGCucGugAGCGUGaUCGCGCCGg -3'
miRNA:   3'- uugGGCGucCugUCGCGC-AGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 42669 0.7 0.197799
Target:  5'- cAGCCCGCA--ACAGCGCcgaucGUCuccACGCCGg -3'
miRNA:   3'- -UUGGGCGUccUGUCGCG-----CAG---UGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 37169 0.7 0.20303
Target:  5'- -uCCCGCAGcGCGGCGa--CACGCCGc -3'
miRNA:   3'- uuGGGCGUCcUGUCGCgcaGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 12371 0.7 0.208381
Target:  5'- uGGCgCGCAGGACGcCGCaaugCGCGCCGc -3'
miRNA:   3'- -UUGgGCGUCCUGUcGCGca--GUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 30195 0.7 0.208381
Target:  5'- aGGCgCGCAGGGCAucuuccaguugcGCGgGUCGCGCa- -3'
miRNA:   3'- -UUGgGCGUCCUGU------------CGCgCAGUGCGgc -5'
17075 3' -61.1 NC_004333.2 + 26368 0.7 0.213853
Target:  5'- cGACCgGCuuucgcaucGACGGCGCGgugCGCGCCa -3'
miRNA:   3'- -UUGGgCGuc-------CUGUCGCGCa--GUGCGGc -5'
17075 3' -61.1 NC_004333.2 + 22042 0.69 0.217756
Target:  5'- aGAUCaCGCGGGcggacagaucgugcACGGCGCGUaGCGCCa -3'
miRNA:   3'- -UUGG-GCGUCC--------------UGUCGCGCAgUGCGGc -5'
17075 3' -61.1 NC_004333.2 + 40785 0.69 0.219448
Target:  5'- --gCCGCAGG-CA-CGCGUCAUGUCGc -3'
miRNA:   3'- uugGGCGUCCuGUcGCGCAGUGCGGC- -5'
17075 3' -61.1 NC_004333.2 + 37116 0.69 0.219448
Target:  5'- --gCUGCGGGGCgugcucgaAGCGC-UCACGCCGc -3'
miRNA:   3'- uugGGCGUCCUG--------UCGCGcAGUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.